View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5886_low_12 (Length: 335)

Name: NF5886_low_12
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5886_low_12
NF5886_low_12
[»] chr2 (1 HSPs)
chr2 (18-317)||(7796149-7796448)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 7796448 - 7796149
Alignment:
Q  18 agacgcatatatttttattattacattcgaaatgcaactggacattttttgaaacacagaaaatcctatgtagtagtaatacacaaaacttgcaacagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7796448 agacgcatatatttttattattacattcgaaatgcaactggacattttttgaaacacagaaaatcctatgtagtagtaatacacaaaacttgcaacagaa 7796349  T
Q  118 ttattaaactctacaatgactagtcccattctccacaattatgagtaaagctatttacattatgatcccttcatacatgtcttatagtcaaatccacaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7796348 ttattaaactctacaatgactagtcccattctccacaattatgagtaaagctatttacattatgatcccttcatacatgtcttatagtcacatccacaca 7796249  T
Q  218 aacccattactccataaatgcatccatcatatgatactccatttggaaagatatctactctgtggctgcaagaactgctggcccttccacctgttaattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7796248 aacccattactccataaatgcatccatcatatgatactccatttggaaagatatctactctgtggctgcaagaactgctggcccttccacctgttaattc 7796149  T

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