View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5886_low_13 (Length: 271)
Name: NF5886_low_13
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5886_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 3808083 - 3807911
Alignment:
| Q |
76 |
tttcgtgtggttgattatcttgtttaacaaatgtatcctctctactttgatgatgatgagacatgatgttgcatgctatatgttgttttggtatttgata |
175 |
Q |
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| T |
3808083 |
tttcgtgtggttgattatcttgtttaacaaatgtattatct------tgatgatgatgagacatgatgttgcatgctatatgttgttttggtatttgata |
3807990 |
T |
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| Q |
176 |
acttacatggaatgcactaaccggtaataggcacttatgtattatatgtttgactaagaccgtcttcaagcttgataat |
254 |
Q |
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| T |
3807989 |
acttacatggaatgcactaaccggtaataggcacttatgtattatatgtttgactaagaccgtcttcaagcttgataat |
3807911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 3808273 - 3808207
Alignment:
| Q |
13 |
gattatactttagaatttttggtttaaagtaaatgtttatgttgccactttaattgatctctctttc |
79 |
Q |
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| T |
3808273 |
gattatactttggagtttttggtttaaagtaaatgtttatgttgctacttaaattgatctctctttc |
3808207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 209807 - 209710
Alignment:
| Q |
131 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtattatatgtttga |
228 |
Q |
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| T |
209807 |
atgagtcatgacgttgcatgctacatgtggttttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtattctgtgtttga |
209710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 206380 - 206293
Alignment:
| Q |
131 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtatt |
218 |
Q |
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| T |
206380 |
atgagtcatgacgttgcatgctacatgtggttttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtatt |
206293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 6901960 - 6902057
Alignment:
| Q |
131 |
atgagacatgatgttgcatgctatatgttgttttggtatttgataacttacatggaatgcactaaccggtaataggcacttatgtattatatgtttga |
228 |
Q |
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| T |
6901960 |
atgagtcatgacgttgcatgctacatgtgattttggtatttgataatttccatgcattgcacaaattagtaatatgcacttgtgtattctgtgtttga |
6902057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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