View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5886_low_17 (Length: 233)
Name: NF5886_low_17
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5886_low_17 |
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| [»] scaffold0094 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 7206187 - 7206391
Alignment:
| Q |
1 |
aacataaatcagccttgccattttgttcaccattacgaccatcaaactctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7206187 |
aacataaatcagccttgccattttgttcaccaatacgaccatcaaactctggatgggaaggtataaattcttgtagcgcaggttgatcttgcactaattg |
7206286 |
T |
|
| Q |
101 |
ggtcgataaattagcatttgacataacataacatgtccacccaacaggctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgta |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7206287 |
ggtcgataaattagcatttg-----acataacatgtccacccaacaggctatctacaatggaaaaatcaattctttctaagacaataggttcgtgttgta |
7206381 |
T |
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| Q |
201 |
tataatcatt |
210 |
Q |
| |
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|||||||||| |
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| T |
7206382 |
tataatcatt |
7206391 |
T |
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Target: scaffold0094 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 10413 - 10257
Alignment:
| Q |
48 |
tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag |
147 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
10413 |
tctgggtgggaaggtataaattcttgtagggcaggttgatcttgcactaattgggtcgataaattagtattcg-----gcataacatgtccacccaacag |
10319 |
T |
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| Q |
148 |
gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat |
209 |
Q |
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| T |
10318 |
actatcaacattggacaaatcaattctttctaacacaataggttcgtgatgtatataatcat |
10257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 9467 - 9623
Alignment:
| Q |
48 |
tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag |
147 |
Q |
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| T |
9467 |
tctgggtgggaaggtataaattcttgtagggcaggttgatcttgcacaaattgggtcgataaattagtattcg-----gcataacatgtccacccaacag |
9561 |
T |
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| Q |
148 |
gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat |
209 |
Q |
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||||| ||| |||| ||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
9562 |
actatcaacattggacaaatcaattctttctaacacaataggttcgtgatgtatataatcat |
9623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 9326 - 9361
Alignment:
| Q |
5 |
taaatcagccttgccattttgttcaccattacgacc |
40 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
9326 |
taaatcagccttgccattttcttcaccattacgacc |
9361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 10554 - 10519
Alignment:
| Q |
5 |
taaatcagccttgccattttgttcaccattacgacc |
40 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
10554 |
taaatcagccttgccattttcttcaccattacgacc |
10519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 17214766 - 17214922
Alignment:
| Q |
48 |
tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag |
147 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
17214766 |
tctgggtgggaaggtataaattcttgtagggcaagttgatctagcactaattgggtcgataaattagcatttg-----gcataacatgtccacccaagag |
17214860 |
T |
|
| Q |
148 |
gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat |
209 |
Q |
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|||||| ||| |||| ||||||||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
17214861 |
gctatcaacattggacaaatcaattctttgtaagacaatatgttcgcgatgtatataatcat |
17214922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 17215733 - 17215577
Alignment:
| Q |
48 |
tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag |
147 |
Q |
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| T |
17215733 |
tctgggtggaaaggtataaattcttgcagcgcaagttgatcttgcactaattggttcgataaattagcatttg-----gcataacatgtccacccaacat |
17215639 |
T |
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| Q |
148 |
gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat |
209 |
Q |
| |
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|||||| ||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
17215638 |
gctatcaacattggacaaatcaattctttctaggacaataggttcgcgatgtatataatcat |
17215577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 17215874 - 17215831
Alignment:
| Q |
5 |
taaatcagccttgccattttgttcaccattacgaccatcaaact |
48 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
17215874 |
taaatcagccttgccattttcttcaccattacgaccaccaaact |
17215831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 31242761 - 31242912
Alignment:
| Q |
47 |
ctctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaaca |
146 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
31242761 |
ctctgggtgggaaggtataaactcttgtag------ttgatcttgcactaattgggtcgataaattagcatttg-----ccataacatgtccacccaata |
31242849 |
T |
|
| Q |
147 |
ggctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat |
209 |
Q |
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||||||| ||| |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
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| T |
31242850 |
ggctatcaacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcat |
31242912 |
T |
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