View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5886_low_6 (Length: 425)
Name: NF5886_low_6
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5886_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 5075357 - 5074948
Alignment:
| Q |
11 |
aagaaccaaacatggtatttgacctaaaatatataacaaccctcttattattatttttt--ctataaccaatcaaaccctttagaaaatggcaacgcaat |
108 |
Q |
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| T |
5075357 |
aagaatcaaacatgatatttgacctaaaatatataccaaccctcttattattattttttttctataaccaatcaaaccctttagaaaatggcaacgcaat |
5075258 |
T |
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| Q |
109 |
acatgcagcaccacaaaataatatatggatgaaataaataagcaacgaataannnnnnnnatatgtatagattttggacgaagagatggtttatgtaaga |
208 |
Q |
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| T |
5075257 |
acatgcagcaccacaaaataatatatggatgaaataaataagcaacgaataattttttttatatgtatagattttggacgaagagatggtttatg-aaga |
5075159 |
T |
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| Q |
209 |
cattttaaaagactttcaaactcaaaataaatttaaannnnnnnnnnnnnnnnnnatcaatatgctaatgtcatacaacgca---aaccaacaaatacgt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| ||| ||||||||||| |
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| T |
5075158 |
cattttaaaagactttcaaactcaaaataaatttaaa--------tgttttttttatcaatatg-ttatgtcaaacaacgcaaccaacaaacaaatacgt |
5075068 |
T |
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| Q |
306 |
caatttcaatgaatacaaacagaagcacggggataggacctgccacacgtgtacttaatcattatataagcgacttcatattttattatgtttccttcta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5075067 |
caatttcaatgaatacaaacagaagcacggggataggacctgccacacgtgtacataatcattatataaacgacttcatattttattatgtttccttcta |
5074968 |
T |
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| Q |
406 |
tctgttaaatgattgtactc |
425 |
Q |
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| T |
5074967 |
tctgttaaatgattgtactc |
5074948 |
T |
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