View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5887-Insertion-1 (Length: 1055)

Name: NF5887-Insertion-1
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5887-Insertion-1
NF5887-Insertion-1
[»] chr8 (5 HSPs)
chr8 (399-952)||(44764871-44765424)
chr8 (399-698)||(44761823-44762117)
chr8 (401-495)||(11825056-11825148)
chr8 (643-736)||(24249012-24249105)
chr8 (401-467)||(1495750-1495816)
[»] chr4 (9 HSPs)
chr4 (399-736)||(36053740-36054072)
chr4 (399-700)||(36050517-36050813)
chr4 (399-698)||(55322334-55322638)
chr4 (401-616)||(12637949-12638158)
chr4 (399-533)||(27387636-27387770)
chr4 (399-489)||(24733676-24733766)
chr4 (621-697)||(45735883-45735959)
chr4 (689-736)||(9236747-9236793)
chr4 (399-432)||(10129632-10129665)
[»] chr2 (11 HSPs)
chr2 (179-399)||(26458103-26458323)
chr2 (417-691)||(45327422-45327685)
chr2 (399-504)||(31211858-31211963)
chr2 (97-181)||(26458380-26458464)
chr2 (408-482)||(31193244-31193318)
chr2 (617-736)||(4472664-4472783)
chr2 (584-637)||(28149295-28149348)
chr2 (399-448)||(40400909-40400958)
chr2 (498-590)||(40400997-40401089)
chr2 (427-466)||(28860834-28860873)
chr2 (584-617)||(28860690-28860723)
[»] chr1 (9 HSPs)
chr1 (399-697)||(23405475-23405769)
chr1 (399-535)||(18583886-18584022)
chr1 (636-729)||(24618562-24618657)
chr1 (401-526)||(13087701-13087825)
chr1 (399-493)||(21075941-21076035)
chr1 (618-699)||(13087572-13087653)
chr1 (422-617)||(16544320-16544506)
chr1 (448-492)||(9893800-9893844)
chr1 (617-698)||(18584089-18584170)
[»] chr7 (14 HSPs)
chr7 (515-697)||(11205731-11205913)
chr7 (399-535)||(42513062-42513198)
chr7 (397-531)||(41712312-41712444)
chr7 (398-495)||(6102956-6103054)
chr7 (399-615)||(30456245-30456456)
chr7 (399-615)||(30452640-30452847)
chr7 (409-521)||(11206499-11206611)
chr7 (399-530)||(49017146-49017277)
chr7 (617-699)||(42513265-42513347)
chr7 (475-534)||(38572287-38572346)
chr7 (399-450)||(4257365-4257416)
chr7 (481-590)||(4257433-4257542)
chr7 (610-698)||(38572408-38572495)
chr7 (705-738)||(17289091-17289124)
[»] scaffold0041 (4 HSPs)
scaffold0041 (8-181)||(15030-15203)
scaffold0041 (211-283)||(15457-15529)
scaffold0041 (179-212)||(15341-15374)
scaffold0041 (325-399)||(15618-15688)
[»] chr5 (9 HSPs)
chr5 (559-698)||(41709389-41709524)
chr5 (399-590)||(24108656-24108848)
chr5 (408-535)||(671476-671603)
chr5 (397-526)||(41709523-41709652)
chr5 (398-535)||(8123542-8123679)
chr5 (542-698)||(19797245-19797397)
chr5 (399-494)||(10321869-10321963)
chr5 (617-699)||(8123393-8123475)
chr5 (617-698)||(671328-671409)
[»] chr3 (12 HSPs)
chr3 (399-698)||(14029173-14029477)
chr3 (399-528)||(36326511-36326640)
chr3 (617-732)||(30911887-30912002)
chr3 (469-535)||(30912069-30912135)
chr3 (447-534)||(55211736-55211819)
chr3 (464-529)||(32414760-32414825)
chr3 (676-732)||(18319371-18319427)
chr3 (617-698)||(36326368-36326449)
chr3 (399-440)||(19798051-19798092)
chr3 (399-440)||(19798296-19798337)
chr3 (399-436)||(1830902-1830939)
chr3 (399-440)||(18319509-18319550)
[»] chr6 (10 HSPs)
chr6 (399-535)||(33242862-33242998)
chr6 (399-527)||(7422669-7422797)
chr6 (399-527)||(7426608-7426736)
chr6 (398-535)||(4834733-4834870)
chr6 (399-527)||(7415661-7415789)
chr6 (399-507)||(13886583-13886691)
chr6 (615-700)||(13886452-13886537)
chr6 (619-686)||(7426464-7426531)
chr6 (617-670)||(7415533-7415586)
chr6 (399-432)||(16389217-16389250)
[»] scaffold1064 (1 HSPs)
scaffold1064 (689-736)||(321-367)


Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 399 - 952
Target Start/End: Complemental strand, 44765424 - 44764871
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||| ||||||||||| ||| ||| || |||||| ||| || |||||  ||||||||||||||||||||||||| | |    
T  44765424 tgatacgacccaattcgagtagggattacactccagaattta-gagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattttca 44765326  T
Q  498 taataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatag 597  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    |||    
T  44765325 taataaggaatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaa----tag 44765230  T
Q  598 aatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44765229 aatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 44765130  T
Q  698 attaccgaccccttcaagatcaaccttgtcctcaaggttttacaatttgctcatgaaaccaannnnnnnctttcctggatcccatgccttgaatggtgac 797  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||| ||||||||| ||||||||||||||    
T  44765129 attaccaaccccttcaagatcaaccttgtcctcaaggttgtacaatttgctcatgaaaccaatttt----tttccaggatcccataccttgaatggtgac 44765034  T
Q  798 caactagctgatgcagaggtactaagatatccaccgggatcccactgttgttctcttccactcctaaaaaac-atac-aattgcgtttgcaccattttaa 895  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  44765033 caactagctgatgcagaggtactaagatatccaccgggatcccactgttgttctcttccactcctaaaaaacaatacaaattgcgtttgcaccattttaa 44764934  T
Q  896 tc-actctgccttggtgtca-cgttga-tttctc-acattccc--aatttttctgttgctgcc 952  Q
    || ||||||||||||||||| |||||| |||||| ||||||||  ||||||| ||||||||||    
T  44764933 tcaactctgccttggtgtcaccgttgattttctcaacattccccaaatttttttgttgctgcc 44764871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 399 - 698
Target Start/End: Complemental strand, 44762117 - 44761823
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| || |||||| ||| || |||||| ||||||||||||||||||||||||| | |    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaattta-gagggagaaactatagaaaagagaaaaaaaattcattatatttttcattgattttca 44762019  T
Q  498 taataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatag 597  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||    |||||||    
T  44762018 taataaggcatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacacaatagcattgcttagtaactaa----ctaatag 44761923  T
Q  598 aatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 697  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44761922 aatatgtctaaaa-atcctttctagattaagatgagtcaaactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 44761824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 401 - 495
Target Start/End: Complemental strand, 11825148 - 11825056
Alignment:
Q  401 atacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattct 495  Q
    ||||||| |||||||  |||||||||||||||| |||||||||||||||| || |||||||||||| |||||| ||  ||||||||||| |||||    
T  11825148 atacgactcaattcgaatagggatcacactccataaattaagagagaaaattaaagataaaagaaaggaaattgat--tatttttcattcattct 11825056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 643 - 736
Target Start/End: Complemental strand, 24249105 - 24249012
Alignment:
Q  643 cttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 736  Q
    |||||||||||||  || |||||||||   |  |||||||| |  |||||||||||||| | |||||||||| |||||| ||||||||||||||    
T  24249105 cttctagaactagacgaatcaccacatgagtgctccttattttgaatatcctatcattatctaccccttcaatatcaacgttgtcctcaaggtt 24249012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 401 - 467
Target Start/End: Original strand, 1495750 - 1495816
Alignment:
Q  401 atacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaa 467  Q
    |||||||||||||||  |||| ||| |||| || |||||| || |||||||||||||||||| ||||    
T  1495750 atacgacccaattcgaataggaatcgcacttcataaattatgaaagaaaactagagataaaaaaaaa 1495816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 399 - 736
Target Start/End: Complemental strand, 36054072 - 36053740
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttat 498  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    || ||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaattcattatatttttcatttcc-ctcat 36053974  T
Q  499 aataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaataga 598  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||    
T  36053973 aataaggcatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaa----taga 36053878  T
Q  599 atatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||||| |||||||||||    
T  36053877 atatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatca 36053778  T
Q  699 ttaccgaccccttcaagatcaaccttgtcctcaaggtt 736  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36053777 ttaccgaccccttcaagatcaaccttgtcctcaaggtt 36053740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 399 - 700
Target Start/End: Complemental strand, 36050813 - 36050517
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttat 498  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    || ||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaattcattatatttttcatttcc-ctcat 36050715  T
Q  499 aataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaataga 598  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||    
T  36050714 aataaggcatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaa----taga 36050619  T
Q  599 atatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||||| |||||||||||    
T  36050618 atatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatca 36050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 399 - 698
Target Start/End: Original strand, 55322334 - 55322638
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattat-atttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||| |||  ||   || |||||||||||||||| |||||||||||| |||||||||| || || |    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattattatttttcattcatcctaa 55322433  T
Q  498 taataaggcatacaatatttatatagacttgtgc--------atacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaacta 589  Q
    |||| |||||||||||  ||||||||||||||||        |||| | |  |||| ||||||||||  |||| |||||||| |||||| ||||    ||    
T  55322434 taatgaggcatacaatgcttatatagacttgtgctgttgtgcatacccgtaataagataactacaataactacacaatagcactgcttaataac----ta 55322529  T
Q  590 actaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagat 689  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    | |||| ||||||||||| |||||||||||    
T  55322530 actaatagaatatgcctaaaagatcccatctagattaagatgagtcatactaccttctagaactagctcggccacctcatttatattcattattctagat 55322629  T
Q  690 atcctatca 698  Q
    |||||||||    
T  55322630 atcctatca 55322638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 401 - 616
Target Start/End: Complemental strand, 12638158 - 12637949
Alignment:
Q  401 atacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttataa 500  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||| |||||||||| ||||||  |  ||||||||||||||| |||| |    
T  12638158 atacgacccaattcgagtaggtatcgcactccagaaattaagagagaaatctagatataaaagaaaggaaatt--tgttatttttcattgattattatca 12638061  T
Q  501 taaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatagaat 600  Q
    | |||||||||||  || ||||  |||||| || | |||  |||| ||||||||| |||||| |||||||  | |||||    | |||||||||||||||    
T  12638060 tgaggcatacaatgcttttataagcttgtggatcctcattataagataactacaacggctacacaatagcgcttcttag----tcactaactaatagaat 12637965  T
Q  601 atgcctaaaagatcct 616  Q
    |||| |||||||||||    
T  12637964 atgcttaaaagatcct 12637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 399 - 533
Target Start/End: Complemental strand, 27387770 - 27387636
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||| || |||||||||||||||||||||||||||  | || |    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaattta-gagggagaaactagagatgaaggaaaagaaattcattatatttttcattcctgctaa 27387672  T
Q  498 taataaggcatacaatatttatatagacttgtgcat 533  Q
    |||| |||||||||||  ||||||||||||||||||    
T  27387671 taatgaggcatacaatgcttatatagacttgtgcat 27387636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 399 - 489
Target Start/End: Complemental strand, 24733766 - 24733676
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcatt 489  Q
    |||||| |||||||||  ||||||||||||||  ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  24733766 tgataccacccaattcaagtagggatcacactttagatattaagagagaaaactagatataaaagaaaggaaattcattatatttttcatt 24733676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 621 - 697
Target Start/End: Complemental strand, 45735959 - 45735883
Alignment:
Q  621 agattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 697  Q
    |||||||||||| |||||||| |||||||| |||   ||||| | ||||||||| ||||||||| | ||||||||||    
T  45735959 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 45735883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 736
Target Start/End: Complemental strand, 9236793 - 9236747
Alignment:
Q  689 tatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 736  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  9236793 tatcctatcattacctaccc-ttcaatatcaaccttgtcctcaaggtt 9236747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 432
Target Start/End: Original strand, 10129632 - 10129665
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactcc 432  Q
    ||||||||||||||||| ||||||||||||||||    
T  10129632 tgatacgacccaattcgagtagggatcacactcc 10129665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 179 - 399
Target Start/End: Complemental strand, 26458323 - 26458103
Alignment:
Q  179 actatttaatgtagcaccttgctattgagaagaattcagttttgatagactaaatttggaagtttatatggaactggaaattgcattgttaagttgatat 278  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26458323 actatttaatgtagcaccttgctattgagaagaattgagttttgatagactaaatttggaagtttatatggaactggaaattgcattgttaagttgatat 26458224  T
Q  279 tttttctataattaaataaaacgaaccagattgtcctgttaagttgacactattccaattgtggcggttgtgagttgtgagcctgccagactaagtggtt 378  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26458223 tttttctataattaaataaaacgaacgagattgtcctgttaagttgacactagtccaattgtggcggttgtgaattgtgagcctgccagactaagtggtt 26458124  T
Q  379 ttctcttctatctgcttattt 399  Q
    |||||||||||||||||||||    
T  26458123 ttctcttctatctgcttattt 26458103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 417 - 691
Target Start/End: Original strand, 45327422 - 45327685
Alignment:
Q  417 gtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttataataaggcatacaatatt 516  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  |||| |||||||| ||||||||  |    
T  45327422 gtagggatcacactccagaaattaagagagaaaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaatgct 45327521  T
Q  517 tatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatagaatatgcctaaaagatcct 616  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||| |||||||||    |||||||||||||||||||||||||||||||||    
T  45327522 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagtattgcttag----taactaactaatagaatatgcctaaaagatcct 45327617  T
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatat 691  Q
    |||| ||||||||| |||||| ||||||| |||||||||||||||||       |||||||||||||||||||||    
T  45327618 ttctggattaagataagtcattctaccttttagaactaggggagtca-------tatattccttattctagatat 45327685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 31211963 - 31211858
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttat 498  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaagaaaattcattatatttttcattgattctcat 31211864  T
Q  499 aataag 504  Q
    ||||||    
T  31211863 aataag 31211858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 26458464 - 26458380
Alignment:
Q  97 ttgccgctatcttctttcagtacttatctgcaagggttggtgtaatcactggacgtggtcttgctcaggtatcatctcattcact 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  26458464 ttgccgctatcttctttcagtacttatctgcaagggttggtgtaatcactggacgtcatcttgctcaggtatcatctcattcact 26458380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 31193318 - 31193244
Alignment:
Q  408 ccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 482  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||  ||||| ||||||||    
T  31193318 ccaattcgagtagggatcacactctagaaattaagagagaaaactagagatgaaagaaagaaaatttattatatt 31193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 617 - 736
Target Start/End: Complemental strand, 4472783 - 4472664
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccgaccccttcaaga 716  Q
    |||||||||||| ||| ||||  |  |||||||||||||| ||||||||| ||  ||  |||||||| ||  ||||||||||||| | | ||||||||||    
T  4472783 ttctagattaaggtgaatcatctttgcttctagaactaggtgagtcaccatataaatgctccttattttaactatcctatcattatctatcccttcaaga 4472684  T
Q  717 tcaaccttgtcctcaaggtt 736  Q
    ||||||||||||||||||||    
T  4472683 tcaaccttgtcctcaaggtt 4472664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 584 - 637
Target Start/End: Complemental strand, 28149348 - 28149295
Alignment:
Q  584 taactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcat 637  Q
    ||||||||||||| ||||||| |||||||||  |||||||||||||||||||||    
T  28149348 taactaactaataaaatatgcataaaagatctcttctagattaagatgagtcat 28149295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 40400909 - 40400958
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaa 448  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaaatttagagagaa 40400958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 498 - 590
Target Start/End: Original strand, 40400997 - 40401089
Alignment:
Q  498 taataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaa 590  Q
    |||| |||||||| ||  ||| |||||||||||||||| |||| |||| ||||||||| | |||   ||||||| |||||| |||||||||||    
T  40400997 taatgaggcatactatgcttaaatagacttgtgcatactcatgataagataactacaacgactatataatagcagtgcttaataactaactaa 40401089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 28860873 - 28860834
Alignment:
Q  427 cactccagaaattaagagagaaaactagagataaaagaaa 466  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  28860873 cactccagaaattaagagagaaaactagagacagaagaaa 28860834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 584 - 617
Target Start/End: Complemental strand, 28860723 - 28860690
Alignment:
Q  584 taactaactaatagaatatgcctaaaagatcctt 617  Q
    ||||||||||||| ||||||||||||||||||||    
T  28860723 taactaactaatataatatgcctaaaagatcctt 28860690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 399 - 697
Target Start/End: Original strand, 23405475 - 23405769
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||  |||||||||||||||||||| ||| ||| || |||||||||| || |||||  ||||||||||||||||||||||||||| |    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctca 23405573  T
Q  498 taataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatag 597  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||||    ||||||||||    
T  23405574 taataaggcatacaatgtttagatagacttgtgcatacacatagtaagataactacaacggctacacaatagtattgcttagtaac----taactaatag 23405669  T
Q  598 aatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  23405670 aatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcatcatatttatattccttattctagatatcctatc 23405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 399 - 535
Target Start/End: Original strand, 18583886 - 18584022
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttat 498  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaagaaaggaaattcagtatatttttcattgattctcat 18583985  T
Q  499 aataaggcatacaatatttatatagacttgtgcatac 535  Q
    ||||| |||||||||  ||||||||||||||||||||    
T  18583986 aataaagcatacaatgcttatatagacttgtgcatac 18584022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 636 - 729
Target Start/End: Original strand, 24618562 - 24618657
Alignment:
Q  636 atactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctat--cattaccgaccccttcaagatcaaccttgtcct 729  Q
    ||||||||||| ||||||||  ||||||||| ||||||| |||||||| || ||| |||||  |||||||||||||||||||||||||||||||||    
T  24618562 atactaccttcaagaactagttgagtcaccaaatttatactccttattttaaataccctatatcattaccgaccccttcaagatcaaccttgtcct 24618657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 13087825 - 13087701
Alignment:
Q  401 atacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatattttt-cattgattcttata 499  Q
    |||||||||||||||  |||| |||||||||||||| ||  ||||||    || ||||||||||||| ||||||||| ||||||| |||| ||||| |||    
T  13087825 atacgacccaattcgaataggtatcacactccagaatttc-gagagaggt-taaagataaaagaaaataaattcattgtattttttcattcattctcata 13087728  T
Q  500 ataaggcatacaatatttatatagact 526  Q
    ||||||||||||||| |||||||||||    
T  13087727 ataaggcatacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 399 - 493
Target Start/End: Original strand, 21075941 - 21076035
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaa-gagagaaaactagagataaaagaaaagaaattcattatatttttcattgatt 493  Q
    |||||||| | |||||| |||||||| ||||||||||| |||  |||||||| ||| |||||||||||| |||||||| |||||||||||||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaa-ctacagataaaagaaaggaaattcactatatttttcattgatt 21076035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 618 - 699
Target Start/End: Complemental strand, 13087653 - 13087572
Alignment:
Q  618 tctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcat 699  Q
    ||||||||||| ||||||||| || |||||||||||||  ||||||||||||| ||  ||||||||||  ||||||||||||    
T  13087653 tctagattaaggtgagtcataataacttctagaactagccgagtcaccacattaatgctccttattctgaatatcctatcat 13087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 422 - 617
Target Start/End: Complemental strand, 16544506 - 16544320
Alignment:
Q  422 gatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttataataaggcatacaatatttatat 521  Q
    ||||||||| ||||||||||   ||||||||| |||||||||||| ||||||| |  |||||||||||||   ||||||| | ||||||||   || |||    
T  16544506 gatcacacttcagaaattaaagaagaaaactaaagataaaagaaaggaaattcgt--tatttttcattga---ttataatgatgcatacaaggcttttat 16544412  T
Q  522 agacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatagaatatgcctaaaagatcctt 617  Q
    |  |||||| ||   ||| ||||| ||||||||||||| ||  ||||||  | |||||    |||||||||| |||| ||||||||||||||||||    
T  16544411 atgcttgtggatcttcatcgtaagataactacaatggccacataatagcgcttcttag----taactaactagtagagtatgcctaaaagatcctt 16544320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 9893844 - 9893800
Alignment:
Q  448 aaactagagataaaagaaaagaaattcattatatttttcattgat 492  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||    
T  9893844 aaactagagatgaaagaaagaaaattcattatatttttcattgat 9893800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 698
Target Start/End: Original strand, 18584089 - 18584170
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    |||||||||||| ||||||||| || ||| || ||||||   || ||||||||| ||  ||||||||||| |||||||||||    
T  18584089 ttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca 18584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 2e-79; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 515 - 697
Target Start/End: Complemental strand, 11205913 - 11205731
Alignment:
Q  515 tttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatagaatatgcctaaaagatc 614  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11205913 tttatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgcttagtaattaactaactaatagaatatgcctaaaagatc 11205814  T
Q  615 ctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 697  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  11205813 ctttctagattaagatgagtcatactactttctagaactaggagagtcaccacatttatattccatattctagatatcctatc 11205731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 399 - 535
Target Start/End: Original strand, 42513062 - 42513198
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||| || |||||  ||||||||||||||||||||||||||| |    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaatta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctca 42513160  T
Q  498 taataaggcatacaatatttatatagacttgtgcatac 535  Q
    |||||| |||||||||  ||||||||||||||||||||    
T  42513161 taataaagcatacaatgcttatatagacttgtgcatac 42513198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 397 - 531
Target Start/End: Complemental strand, 41712444 - 41712312
Alignment:
Q  397 tttgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattctt 496  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||  |  ||||||||||| |||||     
T  41712444 tttgatacgacccaattcgagtaaggatcacactccaaaaattaagagagaaaactagagacaaaagaaaggaaatt--tgttatttttcattcattctc 41712347  T
Q  497 ataataaggcatacaatatttatatagacttgtgc 531  Q
    |||||||| ||||||||| ||||||||||||||||    
T  41712346 ataataagacatacaatacttatatagacttgtgc 41712312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 398 - 495
Target Start/End: Complemental strand, 6103054 - 6102956
Alignment:
Q  398 ttgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaag-aaaagaaattcattatatttttcattgattct 495  Q
    ||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  6103054 ttgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattgattct 6102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 399 - 615
Target Start/End: Complemental strand, 30456456 - 30456245
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| || |||||||||| || |||||  |||||||||||||||||||||  |||| |    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaa 30456358  T
Q  498 taataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatag 597  Q
    | |||||||||| |||  |||||||||||| ||||||| |||  |||| |||||||||   |||| |||||||| |||    | | |||| |||||||||    
T  30456357 tcataaggcatataatgcttatatagactt-tgcatactcataataagataactacaacaactacacaatagcactgc----tcaataacaaactaatag 30456263  T
Q  598 aatatgcctaaaagatcc 615  Q
    ||||||| ||||||||||    
T  30456262 aatatgcttaaaagatcc 30456245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 399 - 615
Target Start/End: Complemental strand, 30452847 - 30452640
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| || |||||||||| || |||||  |||||||||||||||||||||  |||| |    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaa 30452749  T
Q  498 taataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatag 597  Q
    | |||||||||||||    ||||||||||| ||||||| |||  |||| |||||||||   |||| |||||||| |||    | | ||||||||||||||    
T  30452748 tcataaggcatacaa----tatatagactt-tgcatactcataataagataactacaacaactacacaatagcactgc----tcaataactaactaatag 30452658  T
Q  598 aatatgcctaaaagatcc 615  Q
    ||||||| ||||||||||    
T  30452657 aatatgcttaaaagatcc 30452640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 409 - 521
Target Start/End: Complemental strand, 11206611 - 11206499
Alignment:
Q  409 caattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattcttataataaggca 507  Q
    ||||||| |||| ||||||||||||||| ||| ||| || |||||||||| || |||||  ||||||||||||||||||||||||||| |||||||||||    
T  11206611 caattcgagtagagatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggca 11206513  T
Q  508 tacaatatttatat 521  Q
    |||||| |||||||    
T  11206512 tacaatgtttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 399 - 530
Target Start/End: Complemental strand, 49017277 - 49017146
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    |||||||||| ||||||  |||||||||||||||| |||||| |||||| |||||||||||||||||||  ||||  ||||||||||||||| | ||| |    
T  49017277 tgatacgacctaattcgaatagggatcacactccataaatta-gagagagaaactagagataaaagaaagaaaatatattatatttttcattaagtctca 49017179  T
Q  498 taataaggcatacaatatttatatagacttgtg 530  Q
    ||||||||||||||||  ||||| | |||||||    
T  49017178 taataaggcatacaatgcttatacaaacttgtg 49017146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 617 - 699
Target Start/End: Original strand, 42513265 - 42513347
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcat 699  Q
    |||||||||||| ||||||||| || |||||||||||||  |||||||||||||  |  ||||||||||| ||||||||||||    
T  42513265 ttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatcat 42513347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 475 - 534
Target Start/End: Original strand, 38572287 - 38572346
Alignment:
Q  475 attatatttttcattgattcttataataaggcatacaatatttatatagacttgtgcata 534  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||| |||||    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcata 38572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 4257365 - 4257416
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaa 450  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  4257365 tgatacgacccaatatgagtagggatcacactccagaaattaagagataaaa 4257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 481 - 590
Target Start/End: Original strand, 4257433 - 4257542
Alignment:
Q  481 tttttcattgattcttataataaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagt 580  Q
    ||||||||||||| | || || |||||||||||| || ||||| |||||| || | |||  |||| |||||||||  ||||| |||||||  | ||||||    
T  4257433 tttttcattgattttaatcatgaggcatacaatacttttataggcttgtggatcctcattataagataactacaacagctacacaatagcgcttcttagt 4257532  T
Q  581 aactaactaa 590  Q
    ||||||||||    
T  4257533 aactaactaa 4257542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 610 - 698
Target Start/End: Original strand, 38572408 - 38572495
Alignment:
Q  610 agatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    ||||||||| ||||||||| ||||||||| || |||||||||||||  |||||| ||||||  || || |||||||| |||| ||||||    
T  38572408 agatccttt-tagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 705 - 738
Target Start/End: Original strand, 17289091 - 17289124
Alignment:
Q  705 accccttcaagatcaaccttgtcctcaaggtttt 738  Q
    |||||||| |||||||||||||||||||||||||    
T  17289091 accccttcgagatcaaccttgtcctcaaggtttt 17289124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 122; Significance: 5e-62; HSPs: 4)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 15030 - 15203
Alignment:
Q  8 atatgttgaccctggaaagtgggtggcaagtatagaaggtggtgcgaggtttggttttcgtctcatgacttttactcttattttcaattttgccgctatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  || ||||| | || |||||||||||||||||||||    
T  15030 atatgttgaccctggaaagtgggtggcaagtatagaaggtggtgcgaggtttggttttgatctggtggcttttgcgctaattttcaattttgccgctatc 15129  T
Q  108 ttctttcagtacttatctgcaagggttggtgtaatcactggacgtggtcttgctcaggtatcatctcattcact 181  Q
    |||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  15130 ttctgtcagtacttatccgcaagggttggtgtaatcactggacgagatcttgctcaggtatcatgtcattcact 15203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 15457 - 15529
Alignment:
Q  211 aattcagttttgatagactaaatttggaagtttatatggaactggaaattgcattgttaagttgatatttttt 283  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  15457 aattgagttttgacagactaaatttggaagtttatatgaaactggaaattgcattgttactttgatatttttt 15529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 15341 - 15374
Alignment:
Q  179 actatttaatgtagcaccttgctattgagaagaa 212  Q
    |||||||||||||||| |||||||||||||||||    
T  15341 actatttaatgtagcaacttgctattgagaagaa 15374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 15618 - 15688
Alignment:
Q  325 acactattccaattgtggcggttgtgagttgtgagcctgccagactaagtggttttctcttctatctgcttattt 399  Q
    |||||| | |||||||||||||||||| ||||||    |||||| | ||||||||||||||| || |||||||||    
T  15618 acactagttcaattgtggcggttgtgaattgtga----gccagattgagtggttttctcttcaatttgcttattt 15688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 3e-60; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 559 - 698
Target Start/End: Complemental strand, 41709524 - 41709389
Alignment:
Q  559 ctacgcaatagcattgcttagtaactaactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactagggg 658  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41709524 ctacgcaatagcattgcttagtaactaactaa----tagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactagagg 41709429  T
Q  659 agtcaccacatttatattccttattctagatatcctatca 698  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41709428 agtcaccacatttatattccttattctagatatcctatca 41709389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 399 - 590
Target Start/End: Complemental strand, 24108848 - 24108656
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttat 498  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||  ||| ||||||||||||||||||||||| |||| ||    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaat 24108749  T
Q  499 aataaggcatacaatatttatatagacttg-tgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaactaa 590  Q
     ||||| ||||||||  ||||||||||||| ||||||| |||  |||  |||||||||   |||| |||||||| |||| | |||||||||||    
T  24108748 cataagacatacaatgcttatatagacttgttgcatactcataataaaataactacaacaactacacaatagcactgctcaataactaactaa 24108656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 408 - 535
Target Start/End: Complemental strand, 671603 - 671476
Alignment:
Q  408 ccaattcgggtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatttttcattgattcttataataaggca 507  Q
    |||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||    
T  671603 ccaattcgagttgggatcacacttcagaaattaagagagaaagctagagataaaagaaagaaaattcattatatttttcattaattctcataataaggca 671504  T
Q  508 tacaatatttatatagacttgtgcatac 535  Q
    ||||||  ||||||| ||||||||||||    
T  671503 tacaatgattatataaacttgtgcatac 671476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 397 - 526
Target Start/End: Complemental strand, 41709652 - 41709523
Alignment:
Q  397 tttgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattct 495  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||| ||| || |||||| ||| || |||||  |||||||||||||||||||||||||||    
T  41709652 tttgatacgacccaattcgagtagagatcacactccagaattta-gagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattct 41709554  T
Q  496 tataataaggcatacaatatttatatagact 526  Q
     ||||||||||||||||| ||||||||||||    
T  41709553 cataataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 398 - 535
Target Start/End: Complemental strand, 8123679 - 8123542
Alignment:
Q  398 ttgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctt 496  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| ||| || ||| || ||| || |||||  |||||||||||||||||||||||||||     
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaatta-gagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattctc 8123581  T
Q  497 ataataaggcatacaatatttatatagacttgtgcatac 535  Q
    ||||||| |||||||||  ||||||||||||||||||||    
T  8123580 ataataaagcatacaatgcttatatagacttgtgcatac 8123542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 542 - 698
Target Start/End: Complemental strand, 19797397 - 19797245
Alignment:
Q  542 taagctaactacaatggctacgcaatagcattgcttagtaactaactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatacta 641  Q
    |||| |||||||||| | ||| ||||| |||||||||||||||||| ||    || |||||||||||||||| | || || ||||||| || |||| |||    
T  19797397 taagataactacaatagttacacaataacattgcttagtaactaaccaa----tataatatgcctaaaagattccttttaaattaagaggaatcattcta 19797302  T
Q  642 ccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    ||||| ||||||||  |||||| |||||||||| |  |||||||| |||||||||||    
T  19797301 ccttccagaactagatgagtcatcacatttatacttgttattctaaatatcctatca 19797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 10321869 - 10321963
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattc 494  Q
    ||||||||||||||| | |||||||||||||||||  |||| ||||||| || |||||||||| ||||| |||||||||||| ||||||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactcca-taatttagagagataagctagagataagagaaaggaaattcattat-tttttcattgattc 10321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 617 - 699
Target Start/End: Complemental strand, 8123475 - 8123393
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcat 699  Q
    |||||||||||| | ||||||| || |||||||||||||  ||||||||| |||  |  ||||||||||| ||||||||||||    
T  8123475 ttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatcat 8123393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 698
Target Start/End: Complemental strand, 671409 - 671328
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    |||||||||||| ||||||||| || | ||||||| |||  ||||||| | ||| ||  ||||||||||| |||||||||||    
T  671409 ttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttattctaaatatcctatca 671328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 4e-56; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 399 - 698
Target Start/End: Complemental strand, 14029477 - 14029173
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||| ||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  14029477 tgatacggcccaattcgagtagggatcacactccagaattta-gagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattctaa 14029379  T
Q  498 -----taat----aaggcatacaatatttatatagacttgtgcatacacatggtaagctaactacaatggctacgcaatagcattgcttagtaactaact 588  Q
         ||||    ||| |||| ||| ||||||||| ||||||||||| |||  |||| ||||||||| |||||| ||||| || ||||||||||||||||    
T  14029378 atttctaatccacaagacatataatgtttatataggcttgtgcatactcattataagataactacaacggctacacaataacactgcttagtaactaact 14029279  T
Q  589 aactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctaga 688  Q
    ||    |||||||||| |||||||| | |||||||||||||||| |||| |||||||||||||||||  |||||||| ||||| |  | ||||||||| |    
T  14029278 aa----tagaatatgcttaaaagattccttctagattaagatgattcattctaccttctagaactagccgagtcaccgcatttgtgcttcttattctaaa 14029183  T
Q  689 tatcctatca 698  Q
    |||| |||||    
T  14029182 tatcttatca 14029173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 399 - 528
Target Start/End: Complemental strand, 36326640 - 36326511
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| || |||||||||| || |||||  ||||||||||||||||||||||||||| |    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctca 36326542  T
Q  498 taataaggcatacaatatttatatagacttg 528  Q
    |||||| |||||||||  |||||||||||||    
T  36326541 taataaagcatacaatgcttatatagacttg 36326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 617 - 732
Target Start/End: Complemental strand, 30912002 - 30911887
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccgaccccttcaaga 716  Q
    |||||||||||| ||||||||| || ||||||||||||   |||||| ||||||  || || ||||||||  ||||||||||||||||||||||||||||    
T  30912002 ttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattattctaagtatcctatcattaccgaccccttcaaga 30911903  T
Q  717 tcaaccttgtcctcaa 732  Q
    ||||||||||||||||    
T  30911902 tcaaccttgtcctcaa 30911887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 469 - 535
Target Start/End: Complemental strand, 30912135 - 30912069
Alignment:
Q  469 aaattcattatatttttcattgattcttataataaggcatacaatatttatatagacttgtgcatac 535  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  30912135 aaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatac 30912069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 447 - 534
Target Start/End: Original strand, 55211736 - 55211819
Alignment:
Q  447 aaaactagagataaaaga-aaagaaattcattatatttttcattgattcttataataaggcatacaatatttatatagacttgtgcata 534  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||     |||||||||||||||||    
T  55211736 aaaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcata 55211819  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 32414825 - 32414760
Alignment:
Q  464 aaaagaaattcattatatttttcattgattcttataataaggcatacaatatttatatagacttgt 529  Q
    |||| ||| ||||||||||||| |||||||||  |||||||||||||||| |||||||||||||||    
T  32414825 aaaaaaaaatcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgt 32414760  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 676 - 732
Target Start/End: Complemental strand, 18319427 - 18319371
Alignment:
Q  676 tccttattctagatatcctatcattaccgaccccttcaagatcaaccttgtcctcaa 732  Q
    |||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||    
T  18319427 tccttattttaagtatcctatcactaccgaccccttcaagatcaaccttgtcctcaa 18319371  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 617 - 698
Target Start/End: Complemental strand, 36326449 - 36326368
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 698  Q
    |||||||||||  ||||||||| || |||||||||||||  ||||||||||||| ||| || |||||||| |||| ||||||    
T  36326449 ttctagattaatgtgagtcataataacttctagaactagatgagtcaccacattaatactcattattctaaatatgctatca 36326368  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 19798051 - 19798092
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaatta 440  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  19798051 tgatacgacccgattcgagtagggatcacactccagaaatta 19798092  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 19798296 - 19798337
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaatta 440  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  19798296 tgatacgacccaattcgagtagggatcagactccagaaatta 19798337  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 1830939 - 1830902
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaa 436  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  1830939 tgatacgacccaattcaagtagggatcacactccagaa 1830902  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 18319550 - 18319509
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaatta 440  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||    
T  18319550 tgatacgacccgattcgagtagggatcacactctagaaatta 18319509  T

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Target: chr6 (Bit Score: 98; Significance: 1e-47; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 399 - 535
Target Start/End: Complemental strand, 33242998 - 33242862
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaatta-gagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattctca 33242900  T
Q  498 taataaggcatacaatatttatatagacttgtgcatac 535  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  33242899 taataaggcatacaatgcttatatagacttgtgcatac 33242862  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 399 - 527
Target Start/End: Complemental strand, 7422797 - 7422669
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||| || |||||  ||||||||||||||||||||||||||| |    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaatta-gagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctca 7422699  T
Q  498 taataaggcatacaatatttatatagactt 527  Q
    ||||||||||||||||  ||||||||||||    
T  7422698 taataaggcatacaatgcttatatagactt 7422669  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 399 - 527
Target Start/End: Complemental strand, 7426736 - 7426608
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||||| |||||||||||||||||||||||| || ||| ||| |||||| || |||||  ||||||||||||||||||||||||||| |    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaatta-gaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattctca 7426638  T
Q  498 taataaggcatacaatatttatatagactt 527  Q
    |||||||||||||||| |||||||||||||    
T  7426637 taataaggcatacaatgtttatatagactt 7426608  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 398 - 535
Target Start/End: Complemental strand, 4834870 - 4834733
Alignment:
Q  398 ttgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctt 496  Q
    |||||||||||||||| | |||||||||||||||||||| ||| ||| || |||||||||| || |||||  |||||||||||||||||||||||||||     
T  4834870 ttgatacgacccaatttgagtagggatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattcta 4834772  T
Q  497 ataataaggcatacaatatttatatagacttgtgcatac 535  Q
    ||||| |||||||||||  |||||||||||| |||||||    
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatac 4834733  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 399 - 527
Target Start/End: Complemental strand, 7415789 - 7415661
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    |||||||| |||| | | |||||||||||||||||||||||| |||||| |||||||||| || |||||  ||||||||||||||||||||||||||| |    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaatta-gagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctca 7415691  T
Q  498 taataaggcatacaatatttatatagactt 527  Q
    ||||||||||||||||  ||||||||||||    
T  7415690 taataaggcatacaatgcttatatagactt 7415661  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 399 - 507
Target Start/End: Complemental strand, 13886691 - 13886583
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattatatttttcattgattctta 497  Q
    ||||||||||||||| | |||||||||||||||||||| ||| ||| || |||||||||| || |||||  ||||||||||||||||||||||||||| |    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaattta-gagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaa 13886593  T
Q  498 taataaggca 507  Q
    |||| |||||    
T  13886592 taatgaggca 13886583  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 615 - 700
Target Start/End: Complemental strand, 13886537 - 13886452
Alignment:
Q  615 ctttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcatt 700  Q
    |||||||||||||| ||||||||| ||  || |||||||||  |||||||||||||  |  |||||||||||  ||||||||||||    
T  13886537 ctttctagattaaggtgagtcataataatttatagaactagcagagtcaccacattagtgctccttattctaactatcctatcatt 13886452  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 686
Target Start/End: Complemental strand, 7426531 - 7426464
Alignment:
Q  619 ctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattcta 686  Q
    |||||||||||||||| ||| ||  ||||||||||||  ||||||||||||| ||| || ||||||||    
T  7426531 ctagattaagatgagttataatattttctagaactagctgagtcaccacattaatactcattattcta 7426464  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 670
Target Start/End: Complemental strand, 7415586 - 7415533
Alignment:
Q  617 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatt 670  Q
    ||||| |||||||||||||||| ||  ||||||||||||  |||||||||||||    
T  7415586 ttctaaattaagatgagtcataatattttctagaactagctgagtcaccacatt 7415533  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 432
Target Start/End: Original strand, 16389217 - 16389250
Alignment:
Q  399 tgatacgacccaattcgggtagggatcacactcc 432  Q
    ||||||||||||||||| ||||||||||||||||    
T  16389217 tgatacgacccaattcgagtagggatcacactcc 16389250  T

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Target: scaffold1064 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 689 - 736
Target Start/End: Complemental strand, 367 - 321
Alignment:
Q  689 tatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggtt 736  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  367 tatcctatcattacctaccc-ttcaagatcaaccttgtcctcaaggtt 321  T

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