View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887-Insertion-2 (Length: 840)
Name: NF5887-Insertion-2
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887-Insertion-2 |
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| [»] chr4 (8 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 434 - 840
Target Start/End: Complemental strand, 52248869 - 52248464
Alignment:
| Q |
434 |
aagtgtgtaaaatgagatcagtgagcaatgcataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttt |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248869 |
aagtgtgtaaaatgagatcagtgagcaatgcataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttt |
52248770 |
T |
|
| Q |
534 |
taaaaaataaaactcttacctctttgaatctgtaaatattaggatgccttgaattatgttccaagttgaagatgttgaaattccttgatttgagctataa |
633 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248769 |
taaaaaataaaactcttacctctttgaatctgtaaatattaggatgccttgaattacgttccaagttgaagatgttgaaattccttgatttgagctataa |
52248670 |
T |
|
| Q |
634 |
catgttgtcaggacctgtttctgagacactttttggtttgaaactcattgaagtgttgaatatttaaaagtaactcgtttcctggtgagtttttccacct |
733 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52248669 |
catgttgtcaggacctgtttctgagacactttttggtttgaaactcattgaagtgttgaatattt-aaagtaactcgtttcctggtgagtttttccacct |
52248571 |
T |
|
| Q |
734 |
tggtgaatttccacgtctacttgctctcagtgtgagtaacaattcattcactggtggattcagttctcaaatttgcaattcttccaaggttcttcacaca |
833 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248570 |
tggtgaatttccacgtctacttgctctcagtgtgagtaacaattcattcactggtggattcagttctcaaatttgcaattcttccaaggttcttcacaca |
52248471 |
T |
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| Q |
834 |
cttgatt |
840 |
Q |
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||||||| |
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| T |
52248470 |
cttgatt |
52248464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 52249341 - 52249157
Alignment:
| Q |
9 |
gttactatttaccttaacaaaatcatgtattcttctaagtgcatttgatttcattagtacaaatgttactatttaccttaacaaaatccttcttaatgtt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52249341 |
gttactatttaccttaacaaaatcatgtattcttctaagtgcatttgatttcattagtacaaatgttactatttaccttaacaaaatccttcttaatgtt |
52249242 |
T |
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| Q |
109 |
gctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatgctatt |
193 |
Q |
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| T |
52249241 |
gctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatgctatt |
52249157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 254 - 433
Target Start/End: Complemental strand, 52249096 - 52248917
Alignment:
| Q |
254 |
caggtacatactagacctattaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgaga |
353 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52249096 |
caggtacatactagacctattaaccttgaagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgaga |
52248997 |
T |
|
| Q |
354 |
tctctatgacgaatttcctgaagtgtaatataagagagtgcttggataccattgaatgatagtagctaacaccagatatt |
433 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248996 |
tctctatgacgaatttcctaaagtgtaatataagagagtgcttggataccattgaatgatagtagctaacaccagatatt |
52248917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 41126261 - 41126159
Alignment:
| Q |
271 |
tattaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaatttc |
370 |
Q |
| |
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||||||||||||||||| | |||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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| T |
41126261 |
tattaaccttggagtaaccaaagtcacaaattttaagccgaggggatggatttccatccaagagagtgttttccaatttcagatctctatgacaaatttc |
41126162 |
T |
|
| Q |
371 |
ctg |
373 |
Q |
| |
|
||| |
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|
| T |
41126161 |
ctg |
41126159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 464 - 583
Target Start/End: Complemental strand, 41125094 - 41124975
Alignment:
| Q |
464 |
cataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttttaaaaaataaaactcttacctctttgaatc |
563 |
Q |
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|||||||||||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||| ||| || |||||| ||||||||||||||| |
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| T |
41125094 |
cataaagtaatgcagaaaaccaaatactacagtcaaaatgcccctccaaacctaatgaagaaacagtttaaggaaggaaaaactgttacctctttgaatc |
41124995 |
T |
|
| Q |
564 |
tgtaaatattaggatgcctt |
583 |
Q |
| |
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|| |||||||||||||||| |
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| T |
41124994 |
tgataatattaggatgcctt |
41124975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 41119866 - 41119767
Alignment:
| Q |
273 |
ttaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaatttcct |
372 |
Q |
| |
|
||||||||||||||||| || ||| ||| |||||| |||||||||||||||||||||| |||||||||| |||||| ||| || |||||| |||||||| |
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| T |
41119866 |
ttaaccttggagtaatcaaaattgaaaattttaagctgaggggatggatttccatccaatagagtgttttccaatttcagacctgtatgacaaatttcct |
41119767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 434 - 583
Target Start/End: Complemental strand, 41118927 - 41118784
Alignment:
| Q |
434 |
aagtgtgtaaaatgagatcagtgagcaatgcataaagtaatgcagataaccaaatattacattcgaaatgcccctccaaacctaaagaagaaacaatttt |
533 |
Q |
| |
|
||||||||||||||||| |||| |||| | ||||||| |||||||||||||| | ||||| |||| |||| ||||||||| ||||||||| ||| |
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| T |
41118927 |
aagtgtgtaaaatgagagcagtaagca-----tgaagtaatacagataaccaaatactgcattcataatggccctacaaacctaatgaagaaacagttta |
41118833 |
T |
|
| Q |
534 |
taaaaaataaaactcttacctctttgaatctgtaaatattaggatgcctt |
583 |
Q |
| |
|
||| | |||||| ||||||||||||||||| |||||||||||||||| |
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| T |
41118832 |
agaaaga-aaaactgttacctctttgaatctgataatattaggatgcctt |
41118784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 41119700 - 41119665
Alignment:
| Q |
399 |
ataccattgaatgatagtagctaacaccagatatta |
434 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
41119700 |
ataccattgaatgacagtagctaacaccagatatta |
41119665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 596 - 840
Target Start/End: Complemental strand, 32999070 - 32998827
Alignment:
| Q |
596 |
aagttgaagatgttgaaattccttgatttgagctataacatgttgtcaggacctgtttctgagacactttttggtttgaaactcattgaagtgttgaata |
695 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||| |||| ||| ||| |||||| ||||||||| ||||||||||||||||| |
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| T |
32999070 |
aagttgaagatgttgaagtttcttgatttgagctataacatgttgttaggaggtgtgaatgaatcactttctggtttgaagtccattgaagtgttgaata |
32998971 |
T |
|
| Q |
696 |
tttaaaagtaactcgtttcctggtgagtttttccaccttggtgaatttccacgtctacttgctctcagtgtgagtaacaattcattcactggtggattca |
795 |
Q |
| |
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||| || | || || ||| ||| | | |||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
32998970 |
tttcaa-gcaattcattttctgataaagttttccaccttggtgaatttcctcatctacttgcactcaatgtgagtaacaattcattctctggtggattca |
32998872 |
T |
|
| Q |
796 |
gttctcaaatttgcaattcttccaaggttcttcacacacttgatt |
840 |
Q |
| |
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|||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
32998871 |
gttctcaaatttgcaattcttcaagagatcttcacacacttgatt |
32998827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 20009088 - 20009003
Alignment:
| Q |
96 |
ccttcttaatgttgctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaa |
181 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||| |||| |||||||||||||||| ||||||||||||||||||| |
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| T |
20009088 |
ccttcttaatgttgacaagtttaattcttaactctcttgcacaatgtctagcatttcctatttagtagcatttcttttgacaggaa |
20009003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 20028446 - 20028405
Alignment:
| Q |
147 |
catttcctatttagttgcatttcttttgacaggaaagtgatg |
188 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| |
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| T |
20028446 |
catttcctatttagtttcatttcttttgacaggaaggtgatg |
20028405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 12574680 - 12574771
Alignment:
| Q |
97 |
cttcttaatgttgctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatg |
188 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
12574680 |
cttcttaaggttgctaagtttaattcttaactatctagcacaaagtctagcatttcctatttggctgcatttcttttgacaggaaggtgatg |
12574771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 12586885 - 12586973
Alignment:
| Q |
100 |
cttaatgttgctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatg |
188 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||| |||| | ||||||||||||| || |||||||||| |||| |||||| |
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| T |
12586885 |
cttaaggttgctaagtttaattcttaactatctgtcacactgtctagtatttcctatttagccacacttcttttgactggaaggtgatg |
12586973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 4320754 - 4320857
Alignment:
| Q |
270 |
ctattaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaattt |
369 |
Q |
| |
|
||||||||||||||| || | |||| |||| ||||| |||||| | |||| |||||||||| | |||||| | |||||| ||||||||||||| ||||| |
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|
| T |
4320754 |
ctattaaccttggagaaaccaaagtcacaaattttaactcgaggagctggacttccatccaataaagtgttctccaattttagatctctatgacaaattt |
4320853 |
T |
|
| Q |
370 |
cctg |
373 |
Q |
| |
|
|||| |
|
|
| T |
4320854 |
cctg |
4320857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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