View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5887-Insertion-7 (Length: 393)

Name: NF5887-Insertion-7
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5887-Insertion-7
NF5887-Insertion-7
[»] chr7 (1 HSPs)
chr7 (9-393)||(33259623-33260007)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Original strand, 33259623 - 33260007
Alignment:
Q  9 ttttgatcatgttttgaatcttgaattattggaatccatagctgccccacaaggcacatggttaacaactcccctatggttgcttccttccaagtacgtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33259623 ttttgatcatgttttgaatcttgaattattggaatccatagctgccccacaaggcacatggttaacaactcccctatggttgcttccttccaagtacgtg 33259722  T
Q  109 gtatccaacacataattccgattggggctatcacatcatttcattttcacctatttttgtaaattacatcacaataatatgtcacaaattttgacattaa 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33259723 gtatccaacacataattccgattgggtctatcacatcatttcattttcacttatttttgtaaattacatcacaataatatgtcacaaattttgacattaa 33259822  T
Q  209 cccatgaactccgtgtttcatttgtgctcgtccttagtctcaacaaatctcactctgtttagatagtttggttgttcaatcagtcacattctcccatctt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33259823 cccatgaactccgtgtttcatttgtgctcgtccttagtctcaacaaatctcactctgtttagatagtttggttgttcaatcagtcacattctcccatctt 33259922  T
Q  309 atggcgacttgattcatttcataaatatctaatttgtggagaaatctcaccgtttatctatttgatccgtatggccaagttattt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33259923 atggcgacttgattcatttcataaatatctaatttgtggagaaatctcaccgtttatctatttgatccgtatggccaagttattt 33260007  T

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