View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5887_high_14 (Length: 319)
Name: NF5887_high_14
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 8283499 - 8283204
Alignment:
| Q |
16 |
ggaagagttgaggccttgagaattccgttggttcgacgcattggtagacttcttgaacatgctaggccaatgtttgttcgaggaagtcatcactgatcga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8283499 |
ggaagagttgaggccttgagaattccgttggttggacgcattggtagacttcttgaacatgctaggccaatgtttgttcgaggaagtcatcactgatcga |
8283400 |
T |
|
| Q |
116 |
tcgatgatttgcttggatcgatcgacaaattatgagaaattattgaactggaagctagatatcaaaagacacagagaaaattataagagacagaagcact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8283399 |
tcgatgatttgcttggatcgatcgacaaattatgagaaattattgaactggaagctagatatcaaaagacac--agaaaattataagagacagaagcact |
8283302 |
T |
|
| Q |
216 |
aaaattgataataaagcagatactaactgaaatacataatacagtgtatgacataaaaacggaagataaaaggtcaatatttaatatttacagtataa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8283301 |
aaaattgataataaagcagatactaactgaaatacataatacagtgtatgacataaaaacggaagataaaaggccaatatttaatatttacagtataa |
8283204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University