View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5887_high_16 (Length: 314)
Name: NF5887_high_16
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 106859 - 107145
Alignment:
| Q |
18 |
atagaaacatcttaccaaatcagtgaagtgtctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
106859 |
atagaaacatcttaccaaatcagtgaagtgtctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaa |
106958 |
T |
|
| Q |
118 |
tcttcaaagtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
106959 |
tcttcaaagtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgat |
107058 |
T |
|
| Q |
218 |
tttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107059 |
tttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
107145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 113521 - 113792
Alignment:
| Q |
18 |
atagaaacatcttaccaaatcagtgaagtgtctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaa |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
113521 |
atagaaacatcttatcaaatcagtgaagtgtttgcatgatttac-acaatattggatcatctcttcattttgatctttcttttacctttgtggattataa |
113619 |
T |
|
| Q |
118 |
tcttcaaagtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgat |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
113620 |
tcttcaaagtagtaaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacaaaaaatggaagctgat |
113719 |
T |
|
| Q |
218 |
tttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgt-aatccttttccc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
113720 |
tttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaaatccttttccc |
113792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 142771 - 142686
Alignment:
| Q |
214 |
tgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattc |
299 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||||||||||||||||| | |||||| |||| |||||| ||||||||| |
|
|
| T |
142771 |
tgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccatgatgttttaaacatgaaatcattttcctgttcagattc |
142686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University