View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_high_17 (Length: 296)
Name: NF5887_high_17
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 36416871 - 36417148
Alignment:
| Q |
19 |
tttagaatgtggatttggatggtggagagtaaaaggtgggagagggnnnnnnnngttgcaatgaccagagtgtttttcttttctcttggtgaccaattat |
118 |
Q |
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| T |
36416871 |
tttagaatgtggatttggatggtggagagtaaaaggtgggagagggaaaaaaaaggtgcaatgaccagagtgtttttcttttctcttggtgaccaattat |
36416970 |
T |
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| Q |
119 |
gcttttgtgttagtaaatttaaatttaatggtttcattgcagtaagacaagcccaacgaggaaattgcatgggtagcatttgggtgaaattcacctatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| | | |||| |
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| T |
36416971 |
gcttttgtgttagtaaatttaaatttaatggtttcattgcagtaagacaagcccaacgaggaaattgcatcgatagcatttgggtgacattgaacaatca |
36417070 |
T |
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| Q |
219 |
caaatgtcacaatttttgtgaaagagacagaaaaaccacatgtaacaatgtgattatgtcaccaattctatatcaccc |
296 |
Q |
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||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |
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| T |
36417071 |
caaatgtcataatctttgtgaaagagacagaaaaaccacgtgtaacattgtgattatgtcaccaattctatgtcaccc |
36417148 |
T |
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