View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5887_high_20 (Length: 279)
Name: NF5887_high_20
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 37823462 - 37823192
Alignment:
| Q |
1 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823462 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
37823363 |
T |
|
| Q |
101 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823362 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
37823263 |
T |
|
| Q |
201 |
atgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
271 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37823262 |
atgatgaatgtgagtgacgaccaaattggtttgcaatacatgggtgactcttattactacaatgattctgt |
37823192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 37401600 - 37401870
Alignment:
| Q |
1 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401600 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
37401699 |
T |
|
| Q |
101 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401700 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
37401799 |
T |
|
| Q |
201 |
atgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
271 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37401800 |
atgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattctgt |
37401870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 37639304 - 37639034
Alignment:
| Q |
1 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639304 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
37639205 |
T |
|
| Q |
101 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639204 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
37639105 |
T |
|
| Q |
201 |
atgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
271 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37639104 |
atgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattctgt |
37639034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37711062 - 37710823
Alignment:
| Q |
1 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711062 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
37710963 |
T |
|
| Q |
101 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37710962 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccagcatcatgcatcaagaactttcaagga |
37710863 |
T |
|
| Q |
201 |
atgatgaatgtgaatgacagccaaattggtttgcaataca |
240 |
Q |
| |
|
|||||||| |||||||||| |||||| | ||||||||| |
|
|
| T |
37710862 |
atgatgaaggtgaatgacaaaaaaattgatctgcaataca |
37710823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 37593754 - 37593492
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37593754 |
gaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca |
37593655 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593654 |
agcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
37593555 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593554 |
tgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
37593492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 37532650 - 37532387
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37532650 |
gaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca |
37532551 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
37532550 |
agcattcatttcctaagttgagaatttttgatgtttctaacaacaattttagtgggcccttgccaatatcatgcatcaagaactttaaaggaatgatgaa |
37532451 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37532450 |
tgtgaatgacagccaaattggtttgcaatacaagggtgcgggttattactataatgattctgtg |
37532387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 37696145 - 37695883
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37696145 |
gaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca |
37696046 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696045 |
agcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
37695946 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37695945 |
tgtgaatgacagccaaattggtttgcaatacaagggtgacggttattactataatgattctgt |
37695883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 37393487 - 37393723
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
37393487 |
gaggatacttttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatcacatgttctagcacca |
37393586 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
37393587 |
agcatccatttcctaagttgagaatttatgatgtctctagtaacaattttagtggccccttgccaacatcatgcttcaagaactttcaaggaatgatgga |
37393686 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggt |
245 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
37393687 |
tgtgaataacagccaaattggtttgcaatacatgggt |
37393723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 37702233 - 37702023
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
37702233 |
gaggatacatttcccaattggctagaaactttaccagagttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagcacca |
37702134 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37702133 |
agcattcatttcctaagttgagaatttttgatgcctctaacaacaattttagtggccccttgccaacatcatgcatcaagaactttcaaggaatgattaa |
37702034 |
T |
|
| Q |
209 |
tgtgaatgaca |
219 |
Q |
| |
|
||| ||||||| |
|
|
| T |
37702033 |
tgtaaatgaca |
37702023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37382928 - 37383199
Alignment:
| Q |
1 |
acaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttc |
100 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| |||||||||| ||| ||||||||| | |||||| |||||||||| |||||||| |||||||| || || |
|
|
| T |
37382928 |
acaacgtagaggatacttttcccaattggcttgaaactctacaagaattacaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctc |
37383027 |
T |
|
| Q |
101 |
tagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaagga |
200 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
37383028 |
tagcaccaaacatccatttcccaagttgagaatttttgatgtctctaacaacaattttattgggcccttgccaacatcgtgcatcaagaattttcaagga |
37383127 |
T |
|
| Q |
201 |
atgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
272 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
37383128 |
atgatgaatgtgaatgacaataacactggtttgcaatacatgggtaagtccaattactataatgattctgtg |
37383199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 37435260 - 37434997
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||| | |||||| |||||||||| ||| ||||| ||||||||||||||| ||||| |
|
|
| T |
37435260 |
gaggatacatttcccaattggctagaaactctacaagagttacaggtactcagtttaagatcaaataaacttaatggttcaatcacctgttctaacacca |
37435161 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
| ||| | ||| | ||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37435160 |
accatcctttttctaagttaagaatttttgacatcttcggtaacaattttagtggatccttgccaacatcatgtatcaagaactttcaaggaatgatgaa |
37435061 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
272 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
37435060 |
tgtgaatgatagccagattggtttgcaatacatgggtaagaacaattactataatgattctgtg |
37434997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 37413775 - 37413908
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37413775 |
gaggatacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacaa |
37413874 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgt |
142 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |
|
|
| T |
37413875 |
agcatacatttcccaagttgagaatattttatgt |
37413908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 62 - 272
Target Start/End: Complemental strand, 37428548 - 37428339
Alignment:
| Q |
62 |
tttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagt |
161 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||| ||||||| ||||| ||| |||| ||||||||||||||||| || ||| ||| || | ||||||| |
|
|
| T |
37428548 |
tttaagatcaaataaactgcatggtacaatcacttgttctatgaccaaacatccatt-cccaagttgagaattttcgacatctataataaaatttttagt |
37428450 |
T |
|
| Q |
162 |
gggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactata |
261 |
Q |
| |
|
|| |||||||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||| || ||||||||| |
|
|
| T |
37428449 |
ggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactata |
37428350 |
T |
|
| Q |
262 |
atgattctgtg |
272 |
Q |
| |
|
||||||||||| |
|
|
| T |
37428349 |
atgattctgtg |
37428339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 26437777 - 26437679
Alignment:
| Q |
105 |
accaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatg |
203 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||| ||||| ||||||||||| | ||||| ||| | | |||||| |||||| |||||||| |
|
|
| T |
26437777 |
accaaccaaacatttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26437679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 26451146 - 26451048
Alignment:
| Q |
105 |
accaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatg |
203 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||| ||||| ||||||||||| | ||||| ||| | | |||||| |||||| |||||||| |
|
|
| T |
26451146 |
accaaccaaacatttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26451048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 14552922 - 14552686
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||||| || |
|
|
| T |
14552922 |
gaggatacatttcccaattggctagaaactctacaagagttacaagtgctaagtttacgatcaaatcatcttcacggagcaatcacctgttctagcatca |
14552823 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14552822 |
agcattcatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
14552723 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14552722 |
cgtgaatgacagccaaattggtttgcaatacatgggt |
14552686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 16843606 - 16843837
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||||| | ||||||||| |||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
16843606 |
gaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcacca |
16843705 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16843706 |
agcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaa |
16843805 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaataca |
240 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||| |
|
|
| T |
16843806 |
tgtggatgatagccagattggtttgcaataca |
16843837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 24218344 - 24218604
Alignment:
| Q |
12 |
gatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagc |
111 |
Q |
| |
|
||||||||||| ||||| ||||| ||| | |||||||||||| | ||||||||||||||| |||||||||||| |||||| |||||||||||||| | |
|
|
| T |
24218344 |
gatacatttcccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaac |
24218443 |
T |
|
| Q |
112 |
atacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgt |
211 |
Q |
| |
|
| ||||||| ||| ||||||||| ||||||||| || ||||| |||| ||| |||||||||| ||| ||||||| |||||||||||||| ||||| |
|
|
| T |
24218444 |
aatcatttccgaagatgagaatttacgatgtctctggtaataatttccgtggccccgtgccaacatcttgcctcaagaattttcaaggaatgattaatgt |
24218543 |
T |
|
| Q |
212 |
gaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
272 |
Q |
| |
|
||||| || || |||||||||||||| |||| || |||| ||||||||||||||| |
|
|
| T |
24218544 |
gaatgtcaataaatctggtttgcaatacatgggtaaggccaattattataatgattctgtg |
24218604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 16846274 - 16846536
Alignment:
| Q |
9 |
gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca |
108 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||| || | |||||| | |||||||| ||| ||||| ||||||| ||||||||||||| |
|
|
| T |
16846274 |
gaggatacatttcccagttggcttgaaactctacaagagttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagcacca |
16846373 |
T |
|
| Q |
109 |
agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaa |
208 |
Q |
| |
|
||||| ||||| |||| ||||||||||| || ||| | ||||| || ||||| || |||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
16846374 |
agcatccattt-ccaaattgagaattttggacatcttcgataacaaattcagtggaccgttgccaacatcatgtatcaagaattttcaaggaatgatgaa |
16846472 |
T |
|
| Q |
209 |
tgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
272 |
Q |
| |
|
| |||||| | ||| ||||||||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
16846473 |
cgcgaatgataataaaactggtttgcagtacatgggaaaggtcaattactataatgattctgtg |
16846536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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