View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_high_25 (Length: 248)
Name: NF5887_high_25
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_25 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 37205448 - 37205561
Alignment:
| Q |
13 |
tcatcacccaaatcatgaagaatggaattcaaaacctcaacattgatggaaacaaaagttgaagttgaagcattaacaacaatagcatcaaatccagaaa |
112 |
Q |
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| T |
37205448 |
tcatcacccaaatcatgaagaatggaattcaaaacctcaacattgatggaaacaaaagttgaagttgaagcattaacaacaatagcatcaaatccagaaa |
37205547 |
T |
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| Q |
113 |
caactaaccctttt |
126 |
Q |
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| T |
37205548 |
caactaaccctttt |
37205561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 37205637 - 37205665
Alignment:
| Q |
202 |
cgtgtatcaggaaccttaatcaccaagaa |
230 |
Q |
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| T |
37205637 |
cgtgtatcaggaaccttaatcaccaagaa |
37205665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 3794 - 3835
Alignment:
| Q |
18 |
acccaaatcatgaagaatggaattcaaaacctcaacattgat |
59 |
Q |
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| T |
3794 |
acccaaatcatgaacaatggaattcaaaaccttaacattgat |
3835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 11450 - 11491
Alignment:
| Q |
18 |
acccaaatcatgaagaatggaattcaaaacctcaacattgat |
59 |
Q |
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| T |
11450 |
acccaaatcatgaacaatggaattcaaaaccttaacattgat |
11491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 6509770 - 6509811
Alignment:
| Q |
18 |
acccaaatcatgaagaatggaattcaaaacctcaacattgat |
59 |
Q |
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| T |
6509770 |
acccaaatcatgaacaatggaattcaaaaccttaacattgat |
6509811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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