View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5887_high_34 (Length: 237)

Name: NF5887_high_34
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5887_high_34
NF5887_high_34
[»] chr8 (8 HSPs)
chr8 (29-157)||(12174036-12174164)
chr8 (29-157)||(12418464-12418592)
chr8 (149-237)||(12185710-12185801)
chr8 (149-237)||(12430138-12430229)
chr8 (149-234)||(12174198-12174286)
chr8 (149-234)||(12418626-12418714)
chr8 (30-155)||(12185550-12185674)
chr8 (30-155)||(12429978-12430102)
[»] chr3 (1 HSPs)
chr3 (58-136)||(4272021-4272103)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 12174036 - 12174164
Alignment:
Q  29 tcaagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattgggagttccatagacacttcgctgaaaattcattgcgggtg 128  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  12174036 tcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattgggagttccatagacactttgctgaaaattcattgctggtg 12174135  T
Q  129 gaactgtttcttcttgatcatcagattca 157  Q
    |||||||||||||||| ||||||||||||    
T  12174136 gaactgtttcttcttgctcatcagattca 12174164  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 12418464 - 12418592
Alignment:
Q  29 tcaagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattgggagttccatagacacttcgctgaaaattcattgcgggtg 128  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  12418464 tcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattgggagttccatagacactttgctgaaaattcattgctggtg 12418563  T
Q  129 gaactgtttcttcttgatcatcagattca 157  Q
    |||||||||||||||| ||||||||||||    
T  12418564 gaactgtttcttcttgctcatcagattca 12418592  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 12185710 - 12185801
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccatatt 237  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12185710 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccatatt 12185801  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 12430138 - 12430229
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccatatt 237  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12430138 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccatatt 12430229  T

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Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 12174198 - 12174286
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccat 234  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12174198 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccat 12174286  T

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Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 12418626 - 12418714
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccat 234  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12418626 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccat 12418714  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 12185550 - 12185674
Alignment:
Q  30 caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgctgaaaattcattgcggg 126  Q
    |||| ||||||||||||||    ||||||||||||| ||||||  ||| |||||||||||||   ||||||||||||||| |||||||||||||||| ||    
T  12185550 caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg 12185645  T
Q  127 tggaactgtttcttcttgatcatcagatt 155  Q
    |||||||||||||||||| ||||||||||    
T  12185646 tggaactgtttcttcttgctcatcagatt 12185674  T

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Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 12429978 - 12430102
Alignment:
Q  30 caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgctgaaaattcattgcggg 126  Q
    |||| ||||||||||||||    ||||||||||||| ||||||  ||| |||||||||||||   ||||||||||||||| |||||||||||||||| ||    
T  12429978 caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg 12430073  T
Q  127 tggaactgtttcttcttgatcatcagatt 155  Q
    |||||||||||||||||| ||||||||||    
T  12430074 tggaactgtttcttcttgctcatcagatt 12430102  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 4272103 - 4272021
Alignment:
Q  58 taagtcttttgtttccactgctt-ccagattgg---gagttccatagacacttcgctgaaaattcattgcgggtggaactgtt 136  Q
    ||||||||||| ||| ||||||| |||||||||   ||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  4272103 taagtcttttgcttctactgctttccagattggaaagagttccatagacactttgctgaaaaatcattgttggtggaactgtt 4272021  T

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