View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_high_5 (Length: 507)
Name: NF5887_high_5
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 43520662 - 43521161
Alignment:
| Q |
1 |
tagaaaattatttacattagagcggtccattataacgggaaacaaatatcccgattccctaatgataatcaagtgatgaatgattatataagagacctta |
100 |
Q |
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| T |
43520662 |
tagaaaattatttacattagagcggtccattataacgggaaacaaatatcccgattccctaatgataatcaagtgatgaatgattatataagagacctta |
43520761 |
T |
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| Q |
101 |
atattagaaaagggtggtcaaaagtttaatattaaccgtaatttaggttgaacacattccataatcaattaatgttcttttctactttgcttcccctggg |
200 |
Q |
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| T |
43520762 |
atattagaaaagggtggtcaaaagtttaatattaaccgtaatttaggttgaacacattccataatcaattaatgttcttttctactttgcttcccctggg |
43520861 |
T |
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| Q |
201 |
tcccttaatagatttttattaagttcaatatttcaatcacctctaagttaataggttctaataaaaaatgatatgttaatgtcttagtgcttcttggcag |
300 |
Q |
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| T |
43520862 |
tcccttaatagatttttattaagttcaatatttcaatcacctctaagttaataggttctaataaaaaatgatatgttaatgtcttagtgcttcttggcag |
43520961 |
T |
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| Q |
301 |
aggttacccattcttattcttatataacatattgtggtagtggtgagatgtttgtgattttatttagagtttatatattagaatactattgaatttaatg |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43520962 |
aggttacccattcttattcttatacaacatattgtggtagtggtgagatgtttgtgattttatttagagtttatatattagaatactattgaatttaatg |
43521061 |
T |
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| Q |
401 |
aaagtatattttaggtataagcaagggcagaactataaagatttcttgcattgagtggaacaaatcgattaaaaaagaatgggttttgattttcatatca |
500 |
Q |
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| T |
43521062 |
aaagtatattttaggtataagcaagggcagaactataaagatttcttgcattgagtggaacaaatcgattaaaaaagaatgggttttgattttcatatca |
43521161 |
T |
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