View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_high_9 (Length: 365)
Name: NF5887_high_9
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 6785995 - 6785653
Alignment:
| Q |
9 |
agcagagacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgacatagtactatgg |
108 |
Q |
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| T |
6785995 |
agcagaaacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgacatagtactatgg |
6785896 |
T |
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| Q |
109 |
aggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcatctcatggc |
208 |
Q |
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||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
6785895 |
aggaggaagaaacttagtgctattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcatctcatggc |
6785796 |
T |
|
| Q |
209 |
tcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttcttctaatgccta |
308 |
Q |
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| T |
6785795 |
tcgctatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttcttctaatgcaaa |
6785696 |
T |
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| Q |
309 |
t--ctctatttttccattatctagtagctagaatcttacttat |
349 |
Q |
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| T |
6785695 |
ttactctatttttccattatctagtagctagaatcttacttat |
6785653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 98 - 349
Target Start/End: Complemental strand, 6728070 - 6727816
Alignment:
| Q |
98 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
197 |
Q |
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| T |
6728070 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacaacaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
6727971 |
T |
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| Q |
198 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttct |
297 |
Q |
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| T |
6727970 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttct |
6727871 |
T |
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| Q |
298 |
tctaatgcctat--ctctatttttccattat----ctagtagctagaatcttacttat |
349 |
Q |
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||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6727870 |
---aatgcaaattactctatttttccattatatatctagtagctagaatcttacttat |
6727816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 6760958 - 6760624
Alignment:
| Q |
11 |
cagagacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgaca--tagta--ctat |
106 |
Q |
| |
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|||| |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||| |||| ||| ||||| |||| |
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| T |
6760958 |
cagaaacaaaacctttctcaactccctctcattcttcatgtaataattttgtggcgcaagatggtggcaatggcatgttgaaggacgcgtagtatactat |
6760859 |
T |
|
| Q |
107 |
ggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcatctcatg |
206 |
Q |
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| T |
6760858 |
ggaggaggaagaaacttagtactattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcatctcatg |
6760759 |
T |
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| Q |
207 |
gctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttcttctaatgcc |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6760758 |
gctcgctatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttcttctaatgca |
6760659 |
T |
|
| Q |
307 |
ta--tctctatttttccattatctagtagctagaa |
339 |
Q |
| |
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|| |||||||||||| ||||| |||||||||||| |
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| T |
6760658 |
tatttctctatttttctattatgtagtagctagaa |
6760624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 98 - 297
Target Start/End: Complemental strand, 6731137 - 6730938
Alignment:
| Q |
98 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
6731137 |
tagtactatggaggaggaagaaacttggtactattgttcttattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaaattcctcaccct |
6731038 |
T |
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| Q |
198 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttct |
297 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
6731037 |
catctcatggatcactatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttct |
6730938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 6731308 - 6731228
Alignment:
| Q |
11 |
cagagacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatga |
91 |
Q |
| |
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|||| |||||||||||| |||||||||||||| | || |||||| |||||||| ||||| | ||||||||||||| |||| |
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| T |
6731308 |
cagaaacaaaacctttctcaactccctctcattcatcgggtaattattttgtggcgcaaaatggtggcaatgacatcatga |
6731228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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