View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_11 (Length: 351)
Name: NF5887_low_11
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 38548116 - 38548428
Alignment:
| Q |
21 |
ggagcaaccgtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattg |
120 |
Q |
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| T |
38548116 |
ggagcaaccgtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattg |
38548215 |
T |
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| Q |
121 |
gaggcaagatttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38548216 |
gaggcaagatttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaa |
38548315 |
T |
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| Q |
221 |
ccacatctctcccagataggactcatctcttcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatatatatagactg |
320 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38548316 |
ccacatctctcccagataggactcatc---tcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatatatatagagtg |
38548412 |
T |
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| Q |
321 |
gtaacatattgtaatt |
336 |
Q |
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|||||||||||||||| |
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| T |
38548413 |
gtaacatattgtaatt |
38548428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 38556215 - 38556528
Alignment:
| Q |
21 |
ggagcaaccgtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattg |
120 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
38556215 |
ggagcaaccgtggatatgaagcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattg |
38556314 |
T |
|
| Q |
121 |
gaggcaag-atttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttga |
219 |
Q |
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||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| |||| |
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| T |
38556315 |
gaggcaaatatttgaataggaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattga |
38556414 |
T |
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| Q |
220 |
accacatctctcccagataggactcatctcttcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatatatatagact |
319 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
38556415 |
gcctcatctctcccagataggactcatc---tcttcatctaataaataaaagctagttgattaaatgaatggatccatgtgataatgatatatatagagt |
38556511 |
T |
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| Q |
320 |
ggtaacatattgtaatt |
336 |
Q |
| |
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|||| |||| ||||||| |
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| T |
38556512 |
ggtaccatactgtaatt |
38556528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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