View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_13 (Length: 336)
Name: NF5887_low_13
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 39016992 - 39016682
Alignment:
| Q |
15 |
tatgaaagcattgaaatgagataataagaaggaaggctacacataaatagaaaatactcctttnnnnnnntcagtagcaaa-tacttccctnnnnnnn-g |
112 |
Q |
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| T |
39016992 |
tatgaaagcattgaaatgagataataagaaggaaggctacacataaatagaaaatactcctttaaaaaaatcagtagcaaaatacttccctaaaaaaaag |
39016893 |
T |
|
| Q |
113 |
gcaattagagtaacttggaggcttgaaacttcaaaatttgtaaccaccatggttgatgtcatgaaataccatgttggtgtcttctttgtctggtaaaatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39016892 |
gcaattagagtaacttggaggcttgaaacttcaaaatttgtaaccaccatggttgatgtcatgaaataccatgttggtgtcttctttgtctggtaaaatt |
39016793 |
T |
|
| Q |
213 |
tagaacttgaaaaaattggtgtcataattcgtagatgacatgtgattccaacacacaatagacaaacgacatttattatttctaaaattgaactactaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39016792 |
tagaacttgaaaaaattggtgtcataattcgtagatgacatgtgattccaacacacaatagacaaacgacatttattatttctaaaattgaactactaga |
39016693 |
T |
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| Q |
313 |
catattaattg |
323 |
Q |
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||||||||||| |
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| T |
39016692 |
catattaattg |
39016682 |
T |
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