View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_2 (Length: 706)
Name: NF5887_low_2
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 34 - 451
Target Start/End: Complemental strand, 40018603 - 40018187
Alignment:
| Q |
34 |
tctctctctttctcaataatttaagatcaagacaattctctacttagttcttgatctattgtaatttgaaatcaagaaagaaaaaacgtttacacttata |
133 |
Q |
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| T |
40018603 |
tctctctctctctcaataatttaagatcaagacaattctctacttagttcttgatctattgtaatttgaaatcaagaaagaaaaaacgtttacagttata |
40018504 |
T |
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| Q |
134 |
ctttactatataataatataaacgggtccggagctattccggtccgggtccaccaccattgcttagggttcatcttcattttcaacaataggatttttcg |
233 |
Q |
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| T |
40018503 |
ctttactatataataatataaacgggtccggagctattccggtccgggtccaccaccattgcttagggttcttctttcttttcaacaataggatttt-cg |
40018405 |
T |
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| Q |
234 |
atgggttcgaaaccgtggctatatcctgctccaacgtataaaccgatagaaagtttttgggatactgatgaagacgcacctggtcctcgctgtggtcata |
333 |
Q |
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| T |
40018404 |
atgggttcgaaaccgtggctatatcctgctccaacgtataaaccgatagaaagtttttgggatactgatgaagacgcacctggtcctcgctgtggtcata |
40018305 |
T |
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| Q |
334 |
ctctcaccgccgtcgccgccactaagtcgcatggtccacggttgattctcttcggtggcgccactgccattgaaggaggatctacttcagctcctggcat |
433 |
Q |
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| T |
40018304 |
ctctcaccgccgtcgccgccactaagtcgcatggtccacggttgattctcttcggtggcgccactgccattgaaggaggatctacttcagctcctggcat |
40018205 |
T |
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| Q |
434 |
tcgtaataatcttctatc |
451 |
Q |
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| T |
40018204 |
tcgtaataatcttctatc |
40018187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 522 - 694
Target Start/End: Complemental strand, 40018116 - 40017938
Alignment:
| Q |
522 |
aggattagctggagttacgaattcagttcatgcttatgatgttgattcnnnnnnntggactaggttcgttcattcattttgaaattcagcttcannnnnn |
621 |
Q |
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| T |
40018116 |
aggattagctggagttacgaattcagttcatgcttatgatgttgattcaaaaaaatggactaggttcgttcattcattttgaaattcagcttcatttttt |
40018017 |
T |
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| Q |
622 |
nnncttgttgttg------ttgttagttgaattgaattgctagtcaagtaactgtgtttgttttatgttatgatgatgt |
694 |
Q |
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| T |
40018016 |
gttgttgttgttgttgttattgttagttgaattgaattgctagtcaagtaactgtgtttgttttatgttatgatgatgt |
40017938 |
T |
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