View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_22 (Length: 265)
Name: NF5887_low_22
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4413407 - 4413661
Alignment:
| Q |
1 |
taaatcacacattatcgagaaggtggtattggaagctgagaagaaatatattaatagaaaattatgattaaattagtaataagatcaaagctttcaaggg |
100 |
Q |
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| T |
4413407 |
taaatcacacattatcgagaaggtggtattggaagttgagaagaaatatattaatagaaaattatgattaaattagtaataagatcaaagctttcaaggg |
4413506 |
T |
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| Q |
101 |
ggaagggggtccattagaataa--ggaaatgaaccattattgatcgatattcgcatatgcaacatttttctaggaaacatatgcaacacttcgagccaga |
198 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4413507 |
ggaagggggtccattagaataaaaggaaatgaaccattattgatcgatattcgcatatgcaacatttttctaggaaacatatgcaacacttcgagccagg |
4413606 |
T |
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| Q |
199 |
ttattacatgcatgatcgcatatttctcaataacaacctatgcgatgcaccacct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4413607 |
ttattacatgcatgatcgcatatttctcaataacaacctatgcgatgcaccacct |
4413661 |
T |
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