View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_24 (Length: 251)
Name: NF5887_low_24
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 8282983 - 8283148
Alignment:
| Q |
16 |
atatgtagcaagcaagagatatatagcctgatcaattatttatccttttattatataattcattttgttactactttctctgcagaacaaaaacttgcgt |
115 |
Q |
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| T |
8282983 |
atatgtagcaagaaagagatatatagcctgatcaattatttatccttttattatataattcattttgttactactttctctgcagaacaaaaacttgcgt |
8283082 |
T |
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| Q |
116 |
gaaaaacgagcagtgtaagtaaaagatacagctatacatgagagttagcaaacatgtttcatgttc |
181 |
Q |
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| T |
8283083 |
gaaaaacgagcagtgtaagtaaaagatacagctatacatgagagttagcaaacatgtttcatgttc |
8283148 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 34685653 - 34685705
Alignment:
| Q |
129 |
tgtaagtaaaagatacagctatacatgagagttagcaaacatgtttcatgttc |
181 |
Q |
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||||||||| || |||||||||||| | |||||||||||||| ||||||||| |
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| T |
34685653 |
tgtaagtaagagctacagctatacacaacagttagcaaacatggttcatgttc |
34685705 |
T |
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