View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5887_low_29 (Length: 242)

Name: NF5887_low_29
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5887_low_29
NF5887_low_29
[»] chr4 (27 HSPs)
chr4 (52-226)||(48187288-48187464)
chr4 (3-54)||(28988470-28988521)
chr4 (3-53)||(1771318-1771368)
chr4 (1-53)||(711958-712010)
chr4 (1-50)||(41878407-41878456)
chr4 (1-53)||(960920-960972)
chr4 (1-57)||(23035974-23036030)
chr4 (1-53)||(25051691-25051743)
chr4 (6-54)||(55966401-55966449)
chr4 (3-54)||(27864561-27864612)
chr4 (3-54)||(46827758-46827809)
chr4 (3-49)||(3756298-3756344)
chr4 (6-52)||(21687005-21687051)
chr4 (3-52)||(32728356-32728405)
chr4 (3-51)||(17619204-17619252)
chr4 (3-51)||(27316765-27316813)
chr4 (5-49)||(43514740-43514784)
chr4 (4-51)||(27550309-27550356)
chr4 (6-53)||(28982877-28982924)
chr4 (12-51)||(36004165-36004204)
chr4 (3-49)||(27893894-27893940)
chr4 (3-57)||(30189267-30189321)
chr4 (6-51)||(12496956-12497001)
chr4 (24-53)||(33703139-33703168)
chr4 (4-49)||(41327596-41327641)
chr4 (23-51)||(35017733-35017761)
chr4 (3-51)||(55272428-55272476)
[»] chr7 (21 HSPs)
chr7 (1-53)||(41861672-41861724)
chr7 (1-52)||(5194281-5194332)
chr7 (1-51)||(5810974-5811024)
chr7 (1-51)||(24001062-24001112)
chr7 (1-51)||(42538481-42538531)
chr7 (1-57)||(43317437-43317493)
chr7 (3-54)||(40236916-40236967)
chr7 (6-52)||(24280651-24280697)
chr7 (4-57)||(5015389-5015442)
chr7 (17-54)||(27535297-27535334)
chr7 (4-49)||(44326180-44326225)
chr7 (4-52)||(35069720-35069768)
chr7 (3-49)||(4638251-4638297)
chr7 (3-49)||(10573751-10573797)
chr7 (6-48)||(26898457-26898499)
chr7 (18-52)||(38160661-38160695)
chr7 (23-52)||(9216301-9216330)
chr7 (17-50)||(31408699-31408732)
chr7 (14-55)||(33384866-33384907)
chr7 (3-52)||(47279749-47279798)
chr7 (15-51)||(31513287-31513323)
[»] chr5 (12 HSPs)
chr5 (3-55)||(7617129-7617181)
chr5 (1-51)||(41334713-41334763)
chr5 (1-53)||(18033980-18034032)
chr5 (3-51)||(33855095-33855143)
chr5 (1-51)||(2614699-2614749)
chr5 (5-51)||(22512305-22512351)
chr5 (3-49)||(25915039-25915085)
chr5 (15-57)||(30622782-30622824)
chr5 (3-53)||(38470577-38470627)
chr5 (5-53)||(33801467-33801515)
chr5 (3-54)||(5256992-5257043)
chr5 (16-51)||(32473459-32473494)
[»] chr3 (23 HSPs)
chr3 (1-60)||(36150121-36150180)
chr3 (1-56)||(54246198-54246253)
chr3 (4-56)||(4190318-4190370)
chr3 (4-52)||(25413680-25413728)
chr3 (3-53)||(47191077-47191127)
chr3 (1-54)||(24688452-24688505)
chr3 (4-49)||(27748565-27748610)
chr3 (3-56)||(46941048-46941101)
chr3 (1-50)||(54237097-54237146)
chr3 (3-55)||(9434120-9434172)
chr3 (3-51)||(42100688-42100736)
chr3 (3-51)||(45126980-45127028)
chr3 (1-60)||(29558284-29558343)
chr3 (3-53)||(10457944-10457994)
chr3 (3-53)||(40808863-40808913)
chr3 (16-57)||(34791823-34791864)
chr3 (1-50)||(40480750-40480799)
chr3 (1-50)||(42394469-42394518)
chr3 (1-49)||(53581908-53581956)
chr3 (18-52)||(25996267-25996301)
chr3 (4-49)||(1078229-1078274)
chr3 (4-53)||(52628030-52628079)
chr3 (23-55)||(47532019-47532051)
[»] chr8 (24 HSPs)
chr8 (1-58)||(36743533-36743590)
chr8 (7-57)||(19386626-19386676)
chr8 (1-56)||(30660792-30660847)
chr8 (3-54)||(35181513-35181564)
chr8 (1-51)||(11582766-11582816)
chr8 (3-57)||(29705356-29705410)
chr8 (12-57)||(10678201-10678246)
chr8 (4-49)||(42699259-42699304)
chr8 (1-50)||(45397317-45397366)
chr8 (5-49)||(30912616-30912660)
chr8 (1-57)||(33630043-33630099)
chr8 (3-53)||(34304786-34304836)
chr8 (5-55)||(42295191-42295241)
chr8 (3-52)||(16603678-16603727)
chr8 (4-49)||(20148762-20148807)
chr8 (11-52)||(42197495-42197536)
chr8 (3-51)||(1375542-1375590)
chr8 (6-54)||(5754900-5754948)
chr8 (1-49)||(26125637-26125685)
chr8 (16-51)||(28977146-28977181)
chr8 (18-52)||(18066785-18066819)
chr8 (3-49)||(29801002-29801048)
chr8 (11-51)||(2166023-2166063)
chr8 (4-52)||(2546995-2547043)
[»] chr2 (21 HSPs)
chr2 (1-57)||(1750408-1750464)
chr2 (3-51)||(16096747-16096795)
chr2 (1-54)||(12302303-12302356)
chr2 (3-54)||(43114554-43114605)
chr2 (3-53)||(966886-966936)
chr2 (4-52)||(18491704-18491752)
chr2 (3-58)||(4764778-4764833)
chr2 (6-53)||(16803966-16804013)
chr2 (6-53)||(16843248-16843295)
chr2 (3-50)||(34817828-34817875)
chr2 (12-51)||(42849907-42849946)
chr2 (11-49)||(7070418-7070456)
chr2 (3-49)||(11825706-11825752)
chr2 (3-49)||(41282026-41282072)
chr2 (1-50)||(19047158-19047207)
chr2 (1-49)||(8896633-8896681)
chr2 (3-51)||(12415512-12415560)
chr2 (3-51)||(12427572-12427620)
chr2 (5-49)||(43490455-43490499)
chr2 (5-49)||(4299474-4299518)
chr2 (24-52)||(30838631-30838659)
[»] chr6 (18 HSPs)
chr6 (1-55)||(7292743-7292797)
chr6 (3-52)||(31109274-31109323)
chr6 (4-56)||(26670062-26670114)
chr6 (1-52)||(9698383-9698434)
chr6 (5-55)||(26466795-26466845)
chr6 (6-51)||(30014343-30014388)
chr6 (3-54)||(3213397-3213448)
chr6 (3-54)||(7273387-7273438)
chr6 (3-51)||(13743273-13743321)
chr6 (3-51)||(13748773-13748821)
chr6 (1-49)||(27441544-27441592)
chr6 (18-52)||(21293744-21293778)
chr6 (3-53)||(33242401-33242451)
chr6 (4-49)||(30735984-30736029)
chr6 (6-54)||(7367546-7367594)
chr6 (24-52)||(21279928-21279956)
chr6 (5-49)||(24204041-24204085)
chr6 (3-51)||(33253913-33253961)
[»] chr1 (16 HSPs)
chr1 (1-55)||(5489772-5489826)
chr1 (3-53)||(44112675-44112725)
chr1 (4-53)||(14427345-14427394)
chr1 (3-51)||(35003294-35003342)
chr1 (3-51)||(43571138-43571186)
chr1 (3-51)||(48119628-48119676)
chr1 (3-57)||(37814772-37814826)
chr1 (3-52)||(38113247-38113296)
chr1 (15-52)||(41065152-41065189)
chr1 (16-51)||(38335918-38335953)
chr1 (3-49)||(7447828-7447874)
chr1 (17-54)||(23989589-23989627)
chr1 (3-53)||(45639784-45639834)
chr1 (3-52)||(750357-750406)
chr1 (4-53)||(48499015-48499064)
chr1 (3-51)||(46168383-46168431)
[»] scaffold0119 (1 HSPs)
scaffold0119 (4-56)||(680-732)
[»] scaffold0385 (1 HSPs)
scaffold0385 (3-53)||(11249-11299)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-52)||(14238-14289)
scaffold0187 (1-52)||(24566-24617)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-50)||(112656-112705)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-49)||(45769-45817)
[»] scaffold0157 (1 HSPs)
scaffold0157 (6-51)||(23476-23521)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 48187464 - 48187288
Alignment:
Q  52 ttttttaaagctaaaacaaatgcatcctttattattttatatttcaaatgttggatacagnnnnnnnn--gtctaatatttggttcttaatagtattatt 149  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  48187464 ttttttaaagttaaaacaaatgcatcctttattattttatatttcaaatgttggatacagaaaaaaaaaagtctaatatttggttcttaatagtattatt 48187365  T
Q  150 gctgaatttttaaattgttcatgacactccctttctcatgctaggtcccctacacaatttatcaacccacatgtttg 226  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48187364 gctgaatttttaaacagttcatgacactccctttctcatgctaggtcccctacacaatttatcaaaccacatgtttg 48187288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 28988521 - 28988470
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  28988521 gggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttccttt 28988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 1771318 - 1771368
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  1771318 gggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcctt 1771368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 712010 - 711958
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  712010 tagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 711958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41878456 - 41878407
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  41878456 tagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 960920 - 960972
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||    
T  960920 tagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcctt 960972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23036030 - 23035974
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||||| ||| ||||||| |||||||||  ||||||||||||||||||||||||    
T  23036030 tagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcctttttt 23035974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25051743 - 25051691
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||||| ||||||||||| |||||||| |||||||||| |||||||||||    
T  25051743 tagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcctt 25051691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 55966401 - 55966449
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  55966401 tgtacaatgggatgtatgaataaagggtgtttatgtaacattttccttt 55966449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 27864612 - 27864561
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| |||||| |||||||||||| |||||| |||||||||||||||||    
T  27864612 gggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttccttt 27864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 46827758 - 46827809
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| ||| | |||||||| |||||||||||||||||||||||||||||    
T  46827758 gggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 46827809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 3756298 - 3756344
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  3756298 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 21687051 - 21687005
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||    
T  21687051 tgtataatggggtgtaaaaataaaggatgttcatgtaacattttcct 21687005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 32728405 - 32728356
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||| ||| |||||||||| |||||| ||||||||||||||||||||    
T  32728405 gggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcct 32728356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 17619204 - 17619252
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| |||||||||| |||| |||||||||||||||||||||    
T  17619204 gggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 27316765 - 27316813
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||||||||||| |||||| ||||||||||||||| | |||||||||||    
T  27316765 gggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 43514740 - 43514784
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||    
T  43514740 gtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 27550356 - 27550309
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||||| ||||| |||||  ||||||||||||||||||||||||||||    
T  27550356 ggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 28982877 - 28982924
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||    
T  28982877 tgtacaatagggtgtagaaataaagggtgttcatgtaacattttcctt 28982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 36004165 - 36004204
Alignment:
Q  12 atggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  36004165 atggggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 27893894 - 27893940
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| |||||| |||||||||||| |||||| ||||||||||||    
T  27893894 gggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 30189321 - 30189267
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    |||||||  |||| |||| |||||||| |||||||||||||||||||||| ||||    
T  30189321 gggtgtacgatggagtgtgtgaataaatggtgttcatgtaacattttcctatttt 30189267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 12497001 - 12496956
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||    
T  12497001 tgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 33703168 - 33703139
Alignment:
Q  24 aataaagggtgttcatgtaacattttcctt 53  Q
    ||||||||||||||||||||||||||||||    
T  33703168 aataaagggtgttcatgtaacattttcctt 33703139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 41327596 - 41327641
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| |||||||||| ||||||||||||||  ||||||||||||    
T  41327596 ggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 35017761 - 35017733
Alignment:
Q  23 gaataaagggtgttcatgtaacattttcc 51  Q
    |||||||||||||||||||||||||||||    
T  35017761 gaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 55272428 - 55272476
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| | |||||||| |||||| |||||||||||||||||||    
T  55272428 gggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41861724 - 41861672
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41861724 tagggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcctt 41861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5194281 - 5194332
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  5194281 tagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcct 5194332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5810974 - 5811024
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  5810974 tagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24001062 - 24001112
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  24001062 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42538481 - 42538531
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  42538481 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43317493 - 43317437
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    |||| |||| |||| |||||||||||||| |||||||||||||||||||||| ||||    
T  43317493 taggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcctatttt 43317437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 40236967 - 40236916
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| ||| || ||||||| |||||||||||||||||||||||||||||    
T  40236967 gggtgtacaataggatgtatgattaaagggtgttcatgtaacattttccttt 40236916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 24280651 - 24280697
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||    
T  24280651 tgtagaatagggtgtatgaataaagggtgttcacgtaacattttcct 24280697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 5015442 - 5015389
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    |||||| ||||| |||||  ||||||| ||||||||||||||||||||||||||    
T  5015442 ggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcctttttt 5015389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27535297 - 27535334
Alignment:
Q  17 gtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27535297 gtgtatgattaaagggtgttcatgtaacattttccttt 27535334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 44326225 - 44326180
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||    
T  44326225 ggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 35069768 - 35069720
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||| |||| |||||| |||||||| |||||||||||||||||||||    
T  35069768 ggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcct 35069720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 4638251 - 4638297
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| ||| | ||||||||||||| |||||||||||||||||||    
T  4638251 gggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 10573797 - 10573751
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| ||| || ||||||||||||||||||| ||||||||||||    
T  10573797 gggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 26898457 - 26898499
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattt 48  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||    
T  26898457 tgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 38160661 - 38160695
Alignment:
Q  18 tgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||| ||||||||||||||||||||||||||||||    
T  38160661 tgtaggaataaagggtgttcatgtaacattttcct 38160695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 9216330 - 9216301
Alignment:
Q  23 gaataaagggtgttcatgtaacattttcct 52  Q
    ||||||||||||||||||||||||||||||    
T  9216330 gaataaagggtgttcatgtaacattttcct 9216301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 31408699 - 31408732
Alignment:
Q  17 gtgtatgaataaagggtgttcatgtaacattttc 50  Q
    |||||||| |||||||||||||||||||||||||    
T  31408699 gtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 33384907 - 33384866
Alignment:
Q  14 ggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  33384907 ggggtgtatgattaaatgatgttcatgtaacattttcctttt 33384866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 47279749 - 47279798
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||| |||||| |||||||||||||||| || |||||| ||||||||    
T  47279749 gggtgtacaatgggatgtatgaataaagggtatttatgtaatattttcct 47279798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 31513323 - 31513287
Alignment:
Q  15 gggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  31513323 gggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 7617181 - 7617129
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7617181 gggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcctttt 7617129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41334713 - 41334763
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41334713 tagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18034032 - 18033980
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  18034032 tagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcctt 18033980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33855095 - 33855143
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  33855095 gggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2614699 - 2614749
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  2614699 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 22512351 - 22512305
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  22512351 gtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 25915039 - 25915085
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  25915039 gggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 30622782 - 30622824
Alignment:
Q  15 gggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  30622782 gggtgtatgattaaaggatgttcatgtaacattttcctttttt 30622824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 38470627 - 38470577
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| |||||  ||||||||||||||||||| ||||||||||||||||    
T  38470627 gggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcctt 38470577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 33801515 - 33801467
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||| |||||||||||  |||||||| |||||||||||||||||||||    
T  33801515 gtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcctt 33801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 5257043 - 5256992
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| |||||| |||||||||||| |||||| |||||||||||| ||||    
T  5257043 gggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttcttt 5256992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 32473459 - 32473494
Alignment:
Q  16 ggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32473459 ggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36150180 - 36150121
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttttaaa 60  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  36150180 tagggtgtataatggggtgtatgaataaagggtattcatgtaacattttccacttttaaa 36150121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 54246198 - 54246253
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttt 56  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  54246198 tagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttccttttt 54246253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 4190318 - 4190370
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttt 56  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  4190318 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttttt 4190370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25413728 - 25413680
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  25413728 ggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcct 25413680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 47191077 - 47191127
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  47191077 gggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcctt 47191127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24688452 - 24688505
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||||| ||||| |||||  |||||||||||||||||||||||||||||||    
T  24688452 tagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttccttt 24688505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 27748610 - 27748565
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  27748610 ggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 46941101 - 46941048
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttt 56  Q
    ||||||| |||| | |||| ||||||||||||||||||||||||||||||||||    
T  46941101 gggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttccttttt 46941048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 54237146 - 54237097
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  54237146 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9434172 - 9434120
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    ||||||| ||| | |||||||| ||||||||||||||||||||||||||||||    
T  9434172 gggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcctttt 9434120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 42100736 - 42100688
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  42100736 gggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 45126980 - 45127028
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  45126980 gggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29558284 - 29558343
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttttaaa 60  Q
    ||||||||| |||| | |||||||||||||||||||||| ||||||| ||||||| ||||    
T  29558284 tagggtgtacaatgagatgtatgaataaagggtgttcatataacattgtccttttataaa 29558343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 10457944 - 10457994
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||| |||||||||| |||| |||||||||||||||||||||||    
T  10457944 gggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcctt 10457994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 40808913 - 40808863
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||||||||||| ||||||| |||||| ||||||||||||||||    
T  40808913 gggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcctt 40808863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 34791864 - 34791823
Alignment:
Q  16 ggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  34791864 ggtgtatgattaaagggtgttcatgtaacattttccattttt 34791823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40480799 - 40480750
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    |||| |||| |||||||  |||||||||||||||||||||||||||||||    
T  40480799 taggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42394469 - 42394518
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||||||||    
T  42394469 tagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53581908 - 53581956
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  53581908 taggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 25996301 - 25996267
Alignment:
Q  18 tgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||| |||||||||||||||||||||||||||    
T  25996301 tgtatgattaaagggtgttcatgtaacattttcct 25996267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 1078274 - 1078229
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| |||| |||| | |||||||||||||||||||||||||||    
T  1078274 ggtgtacaatgaggtgcaggaataaagggtgttcatgtaacatttt 1078229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 52628030 - 52628079
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    |||||| ||| || ||||||| ||||||||||||| ||||||||||||||    
T  52628030 ggtgtacaataggatgtatgattaaagggtgttcacgtaacattttcctt 52628079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 47532019 - 47532051
Alignment:
Q  23 gaataaagggtgttcatgtaacattttcctttt 55  Q
    |||||||||||||| ||||||||||||||||||    
T  47532019 gaataaagggtgtttatgtaacattttcctttt 47532051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36743533 - 36743590
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttta 58  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  36743533 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcctttttta 36743590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 19386626 - 19386676
Alignment:
Q  7 gtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  19386626 gtataatagggtgtatgattaaagggtgttcatgtaacattttcctttttt 19386676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30660792 - 30660847
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttt 56  Q
    ||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||    
T  30660792 tagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttccttttt 30660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 35181564 - 35181513
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||||||||    
T  35181564 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 35181513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11582816 - 11582766
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  11582816 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 29705410 - 29705356
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||| |||||    
T  29705410 gggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttccattttt 29705356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 10678201 - 10678246
Alignment:
Q  12 atggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||    
T  10678201 atggggtgtatgattaaagggtattcatgtaacattttcctttttt 10678246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 42699304 - 42699259
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||    
T  42699304 ggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45397366 - 45397317
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  45397366 tagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 30912616 - 30912660
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  30912616 gtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33630043 - 33630099
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||||| |||| ||||||||| |||||||||||| ||||||||||| |||||||    
T  33630043 tagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttctttttt 33630099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 34304836 - 34304786
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||| |||||||||| |||||| |||||||||||||||||||||    
T  34304836 gggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcctt 34304786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 42295241 - 42295191
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||| |||||    
T  42295241 gtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttctttt 42295191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 16603678 - 16603727
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  16603678 gggtgtataataaggtgtatgattaaagggtgtgcatgtaacattttcct 16603727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 20148807 - 20148762
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||    
T  20148807 ggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 42197495 - 42197536
Alignment:
Q  11 aatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  42197495 aatggggtgtaggaataaatggtgttcatgtaacattttcct 42197536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 1375590 - 1375542
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| |||||||    
T  1375590 gggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 5754948 - 5754900
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    |||| |||||| |||| ||||||| ||||||||||||||||||||||||    
T  5754948 tgtacaatgggatgtaggaataaaaggtgttcatgtaacattttccttt 5754900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26125685 - 26125637
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||||| |||||  ||||||||||||||||||| ||||||||||||    
T  26125685 tagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 28977181 - 28977146
Alignment:
Q  16 ggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||||| |||||||||||||||||||||||||||||    
T  28977181 ggtgtaggaataaagggtgttcatgtaacattttcc 28977146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 18066785 - 18066819
Alignment:
Q  18 tgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||| |||||||||||||||||||||||||||    
T  18066785 tgtatgattaaagggtgttcatgtaacattttcct 18066819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 29801002 - 29801048
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| |||||| |||||||||||| |||||| ||||||||||||    
T  29801002 gggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 2166023 - 2166063
Alignment:
Q  11 aatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||||| ||||||| ||||||||||||| |||||||    
T  2166023 aatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 2547043 - 2546995
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||| ||||| |||||  ||||||| |||||||||||||||||||||    
T  2547043 ggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcct 2546995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1750464 - 1750408
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  1750464 tagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttccattttt 1750408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 16096795 - 16096747
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16096795 gggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12302303 - 12302356
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  12302303 tagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttccttt 12302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 43114605 - 43114554
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||||||||    
T  43114605 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 43114554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 966886 - 966936
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  966886 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 966936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18491752 - 18491704
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  18491752 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 18491704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 4764778 - 4764833
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttta 58  Q
    ||||||| ||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  4764778 gggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcctttttta 4764833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 16804013 - 16803966
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  16804013 tgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 16803966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 16843295 - 16843248
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  16843295 tgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 16843248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 34817828 - 34817875
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  34817828 gggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 42849907 - 42849946
Alignment:
Q  12 atggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  42849907 atggggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 7070456 - 7070418
Alignment:
Q  11 aatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  7070456 aatgggatgtatgaataaagggtgttcatgtaacatttt 7070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11825706 - 11825752
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  11825706 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41282026 - 41282072
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  41282026 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19047207 - 19047158
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||||||||    
T  19047207 tagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8896633 - 8896681
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||||| |||||  ||| ||||||||||||||||||||||||||||    
T  8896633 tagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 12415512 - 12415560
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  12415512 gggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 12427572 - 12427620
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  12427572 gggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 43490455 - 43490499
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||    
T  43490455 gtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4299474 - 4299518
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||| ||| |||||||||| |||||||||||||| |||||||||    
T  4299474 gtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 30838659 - 30838631
Alignment:
Q  24 aataaagggtgttcatgtaacattttcct 52  Q
    |||||||||||||||||||||||||||||    
T  30838659 aataaagggtgttcatgtaacattttcct 30838631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7292797 - 7292743
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  7292797 tagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcctttt 7292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 31109274 - 31109323
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  31109274 gggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcct 31109323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 26670062 - 26670114
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttt 56  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  26670062 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttccttttt 26670114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9698383 - 9698434
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  9698383 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcct 9698434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 26466845 - 26466795
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||||    
T  26466845 gtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcctttt 26466795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 30014388 - 30014343
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  30014388 tgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 3213448 - 3213397
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| |||| | ||||||||||||||||||| |||||||||||||||||    
T  3213448 gggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttccttt 3213397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 7273387 - 7273438
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    ||||||| |||  |||||| ||||||||||||||||||||||||||||||||    
T  7273387 gggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttccttt 7273438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 13743273 - 13743321
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| || |||||||||||| |||||||||||||||||||||    
T  13743273 gggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 13748773 - 13748821
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| || |||||||||||| |||||||||||||||||||||    
T  13748773 gggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27441592 - 27441544
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||| |||| ||| |||||||||| ||||||||||||||||||||||||    
T  27441592 taggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 21293744 - 21293778
Alignment:
Q  18 tgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||||||||||||||| |||||||||||||||    
T  21293744 tgtatgaataaagggtgtttatgtaacattttcct 21293778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 33242451 - 33242401
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| |||  ||||||||| |||| |||||||||||||||||||||||    
T  33242451 gggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcctt 33242401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 30736029 - 30735984
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||||| ||||||||||| |||||||  ||||||||||||||||||    
T  30736029 ggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 7367594 - 7367546
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttccttt 54  Q
    |||| |||| |||||||||||||| | ||||||| ||||||||||||||    
T  7367594 tgtacaatgaggtgtatgaataaatgatgttcatataacattttccttt 7367546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 21279956 - 21279928
Alignment:
Q  24 aataaagggtgttcatgtaacattttcct 52  Q
    |||||||||||||||||||||||||||||    
T  21279956 aataaagggtgttcatgtaacattttcct 21279928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 24204041 - 24204085
Alignment:
Q  5 gtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  24204041 gtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 33253961 - 33253913
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| |||||| ||| |||| |||||||||||||||||||||    
T  33253961 gggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5489826 - 5489772
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttt 55  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  5489826 tagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcctttt 5489772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 44112725 - 44112675
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  44112725 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 44112675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 14427394 - 14427345
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  14427394 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 14427345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 35003342 - 35003294
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  35003342 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 43571138 - 43571186
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  43571138 gggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 48119676 - 48119628
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  48119676 gggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 37814826 - 37814772
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctttttt 57  Q
    ||||||| |||| | ||||||||||||||||||| |||||||||||||| |||||    
T  37814826 gggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcccttttt 37814772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 38113247 - 38113296
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||||||||||    
T  38113247 gggtgtacaatagggtgtatgattaaagggtgttcatataacattttcct 38113296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 41065189 - 41065152
Alignment:
Q  15 gggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||||||||| |||||||||||||||||||||||||||    
T  41065189 gggtgtatgattaaagggtgttcatgtaacattttcct 41065152  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 38335953 - 38335918
Alignment:
Q  16 ggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||||| ||||||||||||||||||||||||||    
T  38335953 ggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 7447874 - 7447828
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    ||||||| |||||| |||| ||||||||| |||||||||||||||||    
T  7447874 gggtgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 23989589 - 23989627
Alignment:
Q  17 gtgtatgaataaa-gggtgttcatgtaacattttccttt 54  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  23989589 gtgtatgaataaaagggtgttcatgtaacattttccttt 23989627  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 45639784 - 45639834
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| ||| || ||||||| ||||| ||||||||||||||||||||||    
T  45639784 gggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcctt 45639834  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 750357 - 750406
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    ||||||| ||||||||||| |||  ||||||||||| |||||||||||||    
T  750357 gggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcct 750406  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 48499015 - 48499064
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    |||||| ||||| |||||  ||||||| ||||||||||||||||||||||    
T  48499015 ggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcctt 48499064  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 46168431 - 46168383
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    ||||||| ||| || | ||||| ||||||||||||||||||||||||||    
T  46168431 gggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

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Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 732 - 680
Alignment:
Q  4 ggtgtataatggggtgtatgaataaagggtgttcatgtaacattttccttttt 56  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  732 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttccttttt 680  T

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Target: scaffold0385 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 11299 - 11249
Alignment:
Q  3 gggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcctt 53  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  11299 gggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcctt 11249  T

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Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14238 - 14289
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||| |||| |||||||||||  |||||||||||||||||||||||||||||    
T  14238 taggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcct 14289  T

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Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24566 - 24617
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttcct 52  Q
    |||| |||| |||||||||||  |||||||||||||||||||||||||||||    
T  24566 taggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcct 24617  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 112705 - 112656
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacattttc 50  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||||||||    
T  112705 tagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45769 - 45817
Alignment:
Q  1 tagggtgtataatggggtgtatgaataaagggtgttcatgtaacatttt 49  Q
    |||| |||| ||| |||||||||| ||||||||||||||||||||||||    
T  45769 taggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 23476 - 23521
Alignment:
Q  6 tgtataatggggtgtatgaataaagggtgttcatgtaacattttcc 51  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||    
T  23476 tgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

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