View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_3 (Length: 600)
Name: NF5887_low_3
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 70 - 310
Target Start/End: Complemental strand, 45024859 - 45024619
Alignment:
| Q |
70 |
tacattaataagtactattagaaaataaaaaacttaatcatcagaaattgtgtttggcataatgagtcagcctcatacaacatgacaaaataaagtttac |
169 |
Q |
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| T |
45024859 |
tacattaataagtactattagaaaataaaaaacttaatcatcagaaattgtgtttggcataatgagtcagcctcataaaacatgacaaaataaagttcac |
45024760 |
T |
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| Q |
170 |
atcttaactaaaaaagatgttcacacttgatatcaacaaacatatctcaaataaaattacctctaacagaggaaaagctatctaaaataaagactgcaat |
269 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
45024759 |
atcttaactaacaaagatgttcacacttgatatcaacaaacatatctcaaataaaattacctctaacagaggaaaaattatctaaaataaagaccgcaat |
45024660 |
T |
|
| Q |
270 |
taatagagtaatgtaatatagtaaataaatgttaacatttt |
310 |
Q |
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| T |
45024659 |
taatagagtaatgtaatataataaataaacgttaacatttt |
45024619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 45024954 - 45024905
Alignment:
| Q |
20 |
cctgcatacacatacagagtgttttgtatgcatcaaataaaaaattacaa |
69 |
Q |
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| T |
45024954 |
cctgcatacacatacagagtgttttgtatgcatcaaataaaaaattacaa |
45024905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 45024206 - 45024152
Alignment:
| Q |
378 |
aattctacatatgagttttcgttaatatttcgtttaagcgcacactctcttataa |
432 |
Q |
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| T |
45024206 |
aattatacatatgagttttcgttaatatttcgtttaagcacacactcttttataa |
45024152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 433 - 558
Target Start/End: Complemental strand, 54443011 - 54442886
Alignment:
| Q |
433 |
gagcaatgttagttgcaggctttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctatannnnnnnataccttacctgatgaccg |
532 |
Q |
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|||||||| ||| |||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
54443011 |
gagcaatgctagctgcatgcgttttaacacttgcgattgaacacacccatttgtagcatgccacgttacctatatttttttataacttacctgctgaccg |
54442912 |
T |
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| Q |
533 |
gttctacacttctacttgttaaaaca |
558 |
Q |
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| T |
54442911 |
gttctacacttctacttgttaaaaca |
54442886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 433 - 558
Target Start/End: Complemental strand, 13747384 - 13747259
Alignment:
| Q |
433 |
gagcaatgttagttgcaggctttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctatannnnnnnataccttacctgatgaccg |
532 |
Q |
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|||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||| |
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| T |
13747384 |
gagcaatgctagctgcatgcgttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctatatttttttataacttgcctgctgaccg |
13747285 |
T |
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| Q |
533 |
gttctacacttctacttgttaaaaca |
558 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13747284 |
gttctacacttctacttgttaaaaca |
13747259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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