View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_30 (Length: 242)
Name: NF5887_low_30
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 4413159 - 4413384
Alignment:
| Q |
17 |
aaataaaggccaaatagttggtttgtttctttgtgggtaaatggttaatggatcaaacaaagtactttgccctgtaatgagatgatcgtgatttactttt |
116 |
Q |
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| T |
4413159 |
aaataaaggccaaatggttggtttgtttctttgtgggtaaatggttaatggatcaaacaaagtactttgccctgtaatgagatgatcgtgatttactttt |
4413258 |
T |
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| Q |
117 |
ttaaactttattcctaatcaatattaatgatgaaatgctcctttaaagaccaaaccttatattaaaagcattgttaattaagaaagtttctttatttgac |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4413259 |
ttaaactttattcttaatcaatattaatgatgaaatgctcctttaaagaccaaaccttatattaaaagcattgttaattaagaaagtttctttatttgac |
4413358 |
T |
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| Q |
217 |
tagctaactaagtcttcaagattctt |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4413359 |
tagctaactaagtcttcaagattctt |
4413384 |
T |
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