View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5887_low_34 (Length: 237)

Name: NF5887_low_34
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5887_low_34
NF5887_low_34
[»] chr8 (8 HSPs)
chr8 (29-157)||(12174036-12174164)
chr8 (29-157)||(12418464-12418592)
chr8 (149-237)||(12185710-12185801)
chr8 (149-237)||(12430138-12430229)
chr8 (149-234)||(12174198-12174286)
chr8 (149-234)||(12418626-12418714)
chr8 (30-155)||(12185550-12185674)
chr8 (30-155)||(12429978-12430102)
[»] chr3 (1 HSPs)
chr3 (58-136)||(4272021-4272103)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 12174036 - 12174164
Alignment:
Q  29 tcaagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattgggagttccatagacacttcgctgaaaattcattgcgggtg 128  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  12174036 tcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattgggagttccatagacactttgctgaaaattcattgctggtg 12174135  T
Q  129 gaactgtttcttcttgatcatcagattca 157  Q
    |||||||||||||||| ||||||||||||    
T  12174136 gaactgtttcttcttgctcatcagattca 12174164  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 12418464 - 12418592
Alignment:
Q  29 tcaagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattgggagttccatagacacttcgctgaaaattcattgcgggtg 128  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  12418464 tcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattgggagttccatagacactttgctgaaaattcattgctggtg 12418563  T
Q  129 gaactgtttcttcttgatcatcagattca 157  Q
    |||||||||||||||| ||||||||||||    
T  12418564 gaactgtttcttcttgctcatcagattca 12418592  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 12185710 - 12185801
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccatatt 237  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12185710 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccatatt 12185801  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 12430138 - 12430229
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccatatt 237  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12430138 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccatatt 12430229  T

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Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 12174198 - 12174286
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccat 234  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12174198 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccat 12174286  T

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Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 12418626 - 12418714
Alignment:
Q  149 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgtttccat 234  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12418626 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctgcttccat 12418714  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 12185550 - 12185674
Alignment:
Q  30 caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgctgaaaattcattgcggg 126  Q
    |||| ||||||||||||||    ||||||||||||| ||||||  ||| |||||||||||||   ||||||||||||||| |||||||||||||||| ||    
T  12185550 caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg 12185645  T
Q  127 tggaactgtttcttcttgatcatcagatt 155  Q
    |||||||||||||||||| ||||||||||    
T  12185646 tggaactgtttcttcttgctcatcagatt 12185674  T

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Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 12429978 - 12430102
Alignment:
Q  30 caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgctgaaaattcattgcggg 126  Q
    |||| ||||||||||||||    ||||||||||||| ||||||  ||| |||||||||||||   ||||||||||||||| |||||||||||||||| ||    
T  12429978 caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg 12430073  T
Q  127 tggaactgtttcttcttgatcatcagatt 155  Q
    |||||||||||||||||| ||||||||||    
T  12430074 tggaactgtttcttcttgctcatcagatt 12430102  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 4272103 - 4272021
Alignment:
Q  58 taagtcttttgtttccactgctt-ccagattgg---gagttccatagacacttcgctgaaaattcattgcgggtggaactgtt 136  Q
    ||||||||||| ||| ||||||| |||||||||   ||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  4272103 taagtcttttgcttctactgctttccagattggaaagagttccatagacactttgctgaaaaatcattgttggtggaactgtt 4272021  T

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