View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_35 (Length: 237)
Name: NF5887_low_35
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12185465 - 12185285
Alignment:
| Q |
1 |
aaattatttttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
100 |
Q |
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| T |
12185465 |
aaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
12185366 |
T |
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| Q |
101 |
aaagacatgcagacaataattgaacc---------tgttgaatcatgacttagatgtctcactgattcaatatctagtcgg |
172 |
Q |
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| T |
12185365 |
aaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcgg |
12185285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12429893 - 12429713
Alignment:
| Q |
1 |
aaattatttttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
100 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12429893 |
aaattatgtttgaaaatttgaacaggggtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
12429794 |
T |
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| Q |
101 |
aaagacatgcagacaataattgaacc---------tgttgaatcatgacttagatgtctcactgattcaatatctagtcgg |
172 |
Q |
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| T |
12429793 |
aaagacatgcaggcaataattgaaccgattgaactagttgaatcatgacttagatgtctcatcgattcaatttctagtcgg |
12429713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12174001 - 12173877
Alignment:
| Q |
1 |
aaattatttttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
100 |
Q |
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| T |
12174001 |
aaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
12173902 |
T |
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| Q |
101 |
aaagacatgcagacaataattgaac |
125 |
Q |
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| T |
12173901 |
aaagacatgcagtcaataattgaac |
12173877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12418429 - 12418305
Alignment:
| Q |
1 |
aaattatttttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12418429 |
aaattatgtttgaaaatttgaacaggagtgtacttgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgt |
12418330 |
T |
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| Q |
101 |
aaagacatgcagacaataattgaac |
125 |
Q |
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|||||||||||| |||||||||||| |
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| T |
12418329 |
aaagacatgcagtcaataattgaac |
12418305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 5583607 - 5583567
Alignment:
| Q |
31 |
tacttgaagaactcttgcatattggatttggcggagacctc |
71 |
Q |
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| T |
5583607 |
tacttgaagaactcttgaatatcggatttggtggagacctc |
5583567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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