View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5887_low_36 (Length: 221)

Name: NF5887_low_36
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5887_low_36
NF5887_low_36
[»] chr8 (17 HSPs)
chr8 (24-205)||(8694703-8694884)
chr8 (134-172)||(1230682-1230720)
chr8 (133-171)||(8982568-8982606)
chr8 (132-174)||(29652218-29652260)
chr8 (133-191)||(33445571-33445629)
chr8 (133-171)||(33620899-33620937)
chr8 (133-174)||(6447190-6447231)
chr8 (133-174)||(7553680-7553721)
chr8 (133-174)||(7968959-7969000)
chr8 (133-174)||(10967213-10967254)
chr8 (141-174)||(18533678-18533711)
chr8 (133-174)||(27134439-27134480)
chr8 (135-187)||(7204872-7204924)
chr8 (138-174)||(8442506-8442542)
chr8 (138-174)||(11052982-11053018)
chr8 (133-173)||(32878662-32878702)
chr8 (142-174)||(44019559-44019591)
[»] chr5 (24 HSPs)
chr5 (133-174)||(18278278-18278319)
chr5 (133-173)||(39917904-39917944)
chr5 (138-171)||(8450625-8450658)
chr5 (133-177)||(6234816-6234860)
chr5 (130-174)||(13409426-13409470)
chr5 (133-172)||(21308970-21309009)
chr5 (133-172)||(21316883-21316922)
chr5 (133-172)||(28447494-28447533)
chr5 (133-191)||(3198331-3198389)
chr5 (133-179)||(7064818-7064864)
chr5 (133-191)||(40276450-40276508)
chr5 (138-191)||(17144485-17144538)
chr5 (133-174)||(18589886-18589927)
chr5 (133-174)||(22498943-22498984)
chr5 (133-174)||(34206228-34206269)
chr5 (133-174)||(36648916-36648957)
chr5 (133-174)||(40056609-40056650)
chr5 (133-174)||(40445984-40446025)
chr5 (133-174)||(43108570-43108611)
chr5 (142-174)||(1669599-1669631)
chr5 (138-174)||(11647203-11647239)
chr5 (138-174)||(16579393-16579429)
chr5 (132-176)||(18147718-18147762)
chr5 (132-172)||(40955516-40955556)
[»] chr7 (20 HSPs)
chr7 (130-174)||(24559495-24559539)
chr7 (133-191)||(10236907-10236965)
chr7 (133-179)||(29461835-29461881)
chr7 (133-174)||(3533027-3533068)
chr7 (162-199)||(37863437-37863474)
chr7 (133-191)||(1399163-1399221)
chr7 (133-171)||(31037665-31037703)
chr7 (133-174)||(1285088-1285129)
chr7 (133-174)||(4398327-4398368)
chr7 (133-174)||(6384852-6384893)
chr7 (133-174)||(9819568-9819609)
chr7 (133-174)||(10721493-10721534)
chr7 (131-172)||(15015240-15015281)
chr7 (133-174)||(19599146-19599187)
chr7 (133-174)||(23198768-23198809)
chr7 (133-190)||(35763706-35763763)
chr7 (140-192)||(2870025-2870077)
chr7 (155-187)||(5936521-5936553)
chr7 (142-174)||(29237576-29237608)
chr7 (142-174)||(39280837-39280869)
[»] chr4 (20 HSPs)
chr4 (133-172)||(21465612-21465651)
chr4 (138-192)||(6520077-6520131)
chr4 (128-174)||(56204943-56204989)
chr4 (133-174)||(37921747-37921788)
chr4 (138-174)||(44689498-44689534)
chr4 (137-172)||(2228417-2228452)
chr4 (133-172)||(34595957-34595996)
chr4 (133-179)||(39401004-39401051)
chr4 (132-171)||(48223567-48223606)
chr4 (133-183)||(3299104-3299154)
chr4 (133-174)||(14577526-14577567)
chr4 (133-174)||(19908693-19908734)
chr4 (133-174)||(29908057-29908098)
chr4 (133-174)||(30380531-30380572)
chr4 (133-174)||(34247441-34247482)
chr4 (133-174)||(40070987-40071028)
chr4 (134-171)||(48824938-48824975)
chr4 (133-174)||(55430597-55430638)
chr4 (132-172)||(9392933-9392973)
chr4 (138-174)||(15170118-15170154)
[»] chr2 (34 HSPs)
chr2 (133-192)||(35727438-35727497)
chr2 (133-174)||(23250339-23250380)
chr2 (128-172)||(8542944-8542988)
chr2 (138-174)||(29979943-29979979)
chr2 (132-171)||(1901506-1901545)
chr2 (132-191)||(19549436-19549495)
chr2 (133-172)||(20517023-20517062)
chr2 (143-174)||(22520228-22520259)
chr2 (131-174)||(35685080-35685123)
chr2 (135-177)||(12353659-12353701)
chr2 (133-179)||(37119272-37119318)
chr2 (132-170)||(42778619-42778657)
chr2 (133-174)||(4897544-4897585)
chr2 (133-174)||(4944938-4944979)
chr2 (133-174)||(6141221-6141262)
chr2 (133-174)||(12124546-12124587)
chr2 (132-173)||(12757128-12757169)
chr2 (133-174)||(18324913-18324954)
chr2 (133-174)||(21497668-21497709)
chr2 (133-174)||(23468063-23468104)
chr2 (133-174)||(24393739-24393780)
chr2 (133-174)||(26133539-26133580)
chr2 (133-174)||(27314868-27314909)
chr2 (133-174)||(28771583-28771624)
chr2 (133-174)||(38443537-38443578)
chr2 (133-174)||(40546317-40546358)
chr2 (133-174)||(43117209-43117250)
chr2 (138-174)||(13196706-13196742)
chr2 (135-183)||(22267516-22267564)
chr2 (138-174)||(22359011-22359047)
chr2 (131-191)||(25192187-25192247)
chr2 (138-174)||(25395461-25395497)
chr2 (138-174)||(32458308-32458344)
chr2 (138-174)||(33966327-33966363)
[»] chr6 (15 HSPs)
chr6 (136-174)||(26587396-26587434)
chr6 (133-174)||(32193878-32193919)
chr6 (138-174)||(3808137-3808173)
chr6 (133-192)||(15305111-15305170)
chr6 (138-192)||(6196532-6196586)
chr6 (133-174)||(21936052-21936093)
chr6 (133-174)||(28951400-28951441)
chr6 (133-174)||(29335594-29335635)
chr6 (138-174)||(2213303-2213339)
chr6 (138-174)||(4273360-4273396)
chr6 (142-174)||(12276250-12276282)
chr6 (133-193)||(15291690-15291750)
chr6 (138-174)||(31971535-31971571)
chr6 (142-174)||(32149148-32149180)
chr6 (138-174)||(34481433-34481469)
[»] chr3 (25 HSPs)
chr3 (133-179)||(23653236-23653282)
chr3 (129-174)||(20222967-20223012)
chr3 (133-174)||(22486684-22486725)
chr3 (133-172)||(19939062-19939101)
chr3 (132-171)||(39869829-39869868)
chr3 (132-191)||(54230101-54230160)
chr3 (132-174)||(21914090-21914132)
chr3 (132-174)||(25505720-25505762)
chr3 (136-174)||(41990603-41990641)
chr3 (130-172)||(50601165-50601207)
chr3 (133-191)||(53681879-53681937)
chr3 (133-174)||(1757688-1757729)
chr3 (133-174)||(5941313-5941354)
chr3 (133-174)||(7868723-7868764)
chr3 (133-174)||(8942018-8942059)
chr3 (133-174)||(13800668-13800709)
chr3 (133-174)||(17588363-17588404)
chr3 (133-174)||(19126550-19126591)
chr3 (138-171)||(37376612-37376645)
chr3 (132-189)||(39100420-39100477)
chr3 (133-174)||(46634574-46634615)
chr3 (138-174)||(3176992-3177028)
chr3 (142-174)||(35492803-35492835)
chr3 (128-172)||(42269294-42269338)
chr3 (156-184)||(50089388-50089416)
[»] scaffold0122 (1 HSPs)
scaffold0122 (133-174)||(14205-14246)
[»] chr1 (33 HSPs)
chr1 (133-174)||(17221539-17221580)
chr1 (137-174)||(25365015-25365052)
chr1 (138-191)||(35951709-35951762)
chr1 (112-172)||(8426356-8426416)
chr1 (133-172)||(13401303-13401342)
chr1 (128-171)||(19316173-19316216)
chr1 (128-174)||(28832190-28832236)
chr1 (132-174)||(30561723-30561765)
chr1 (133-175)||(33229700-33229742)
chr1 (133-174)||(3431331-3431372)
chr1 (140-177)||(5291104-5291141)
chr1 (133-174)||(6000162-6000203)
chr1 (133-174)||(7574137-7574178)
chr1 (133-174)||(24631840-24631881)
chr1 (133-174)||(28032285-28032326)
chr1 (133-174)||(28039879-28039920)
chr1 (133-174)||(29935984-29936025)
chr1 (133-174)||(29987131-29987172)
chr1 (154-199)||(34601784-34601829)
chr1 (138-171)||(39949818-39949851)
chr1 (133-174)||(49875618-49875659)
chr1 (138-174)||(64697-64733)
chr1 (138-174)||(1408441-1408477)
chr1 (138-174)||(18056735-18056771)
chr1 (138-174)||(22821062-22821098)
chr1 (142-174)||(27023674-27023706)
chr1 (135-183)||(27506881-27506929)
chr1 (142-174)||(30795711-30795743)
chr1 (133-173)||(31890769-31890809)
chr1 (138-174)||(32497500-32497536)
chr1 (132-172)||(34083337-34083377)
chr1 (138-174)||(41711729-41711765)
chr1 (130-174)||(52262185-52262229)
[»] scaffold0072 (1 HSPs)
scaffold0072 (133-176)||(25696-25739)
[»] scaffold0352 (1 HSPs)
scaffold0352 (133-174)||(12648-12689)
[»] scaffold0238 (1 HSPs)
scaffold0238 (133-174)||(25390-25431)
[»] scaffold0126 (1 HSPs)
scaffold0126 (133-174)||(34907-34948)
[»] scaffold0005 (1 HSPs)
scaffold0005 (133-174)||(239808-239849)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 8694884 - 8694703
Alignment:
Q  24 atgtggtgaggttcaaatagtgtctcatcacatgttcttagagattaatcattgttaactgacaatgaaactttaaatttac-atgagtaaaaaagtgca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  8694884 atgtggtgaggttcaaatagtgtctcatcacatgttcttagagattaatcattgttaactgacaataaaactttaaatttacaatgagtaaaaaagtgca 8694785  T
Q  123 cttagtcttatgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaactttgaacacttcat 205  Q
     |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  8694784 tttagtcttctgagtttaact-agttagtaagaacaatgcataatatatgtaggggttgaaattcgaactctgaacacttcat 8694703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 1230720 - 1230682
Alignment:
Q  134 gagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  1230720 gagtttaactcagttggtaggaacaatgcataatatatg 1230682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 8982568 - 8982606
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  8982568 tgagtttaattcagttagtatgaacaatgcataatatat 8982606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 29652218 - 29652260
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  29652218 atgagtttagctcagttgataagaacaatgcataatatatgca 29652260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 33445571 - 33445629
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||| ||| ||||||| ||| |||||||||||||||||| || || |||||||||||||    
T  33445571 tgagcttagctcagttggtaggaacaatgcataatatatacaaggtttgagattcgaac 33445629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 33620899 - 33620937
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  33620899 tgagtttaactcagttagtatggacaatgcataatatat 33620937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 6447190 - 6447231
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  6447190 tgagtttaactcagttggtatggacaatgcataatatatgca 6447231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 7553680 - 7553721
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  7553680 tgagtttaactcagttggtagggacaatgcataatatatgca 7553721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 7969000 - 7968959
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||| |||||| ||||| |||||||||||||||||||    
T  7969000 tgagtttaattcagttggtaaggacaatgcataatatatgca 7968959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 10967213 - 10967254
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||| ||  ||||||||||||||||||||||||    
T  10967213 tgagtttaactcaattgataagaacaatgcataatatatgca 10967254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 18533678 - 18533711
Alignment:
Q  141 actcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| |||||||||||||||||||||||||    
T  18533678 actcagttggtaagaacaatgcataatatatgca 18533711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 27134480 - 27134439
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| |||||||| ||||||||||||    
T  27134480 tgagtttaactcagttggtatgaacaatgtataatatatgca 27134439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 7204872 - 7204924
Alignment:
Q  135 agtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattc 187  Q
    |||||| ||||||||||| |||||||| |||||||||||| || || ||||||    
T  7204872 agtttatctcagttagtaggaacaatgtataatatatgcaaggtttaagattc 7204924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 8442542 - 8442506
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  8442542 ttaactcagttggtaaggacaatgcataatatatgca 8442506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 11052982 - 11053018
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||||| | |||||||||||||||||||    
T  11052982 ttaactcagttagtatggacaatgcataatatatgca 11053018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 32878662 - 32878702
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgc 173  Q
    |||| ||| ||||||| ||||||||||||||||||||||||    
T  32878662 tgagcttagctcagttggtaagaacaatgcataatatatgc 32878702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 44019559 - 44019591
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  44019559 ctcagttggtaagaacaatgcataatatatgca 44019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 18278319 - 18278278
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  18278319 tgagtttaactcagttggtaagaacaatgcataatatatgca 18278278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 39917944 - 39917904
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgc 173  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  39917944 tgagtttaactcagttggtaagaacaatgcataatatatgc 39917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 8450625 - 8450658
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||||||||||||||||||||||||||||    
T  8450625 ttaactcagttagtaagaacaatgcataatatat 8450658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 6234860 - 6234816
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggg 177  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  6234860 tgagcttagctcagttagtatgaacaatgcataatatatgcaggg 6234816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 13409426 - 13409470
Alignment:
Q  130 ttatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||    
T  13409426 ttatgagtttagctcagttagtaaagacaatgcataatatatgca 13409470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 21308970 - 21309009
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  21308970 tgagtttaactcagttggtaaggacaatgcataatatatg 21309009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 21316883 - 21316922
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  21316883 tgagtttaactcagttggtaaggacaatgcataatatatg 21316922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 28447494 - 28447533
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  28447494 tgagtttaactcagttagtagggacaatgcataatatatg 28447533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 3198331 - 3198389
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||| ||| ||||||| ||| | ||| |||||||||||||||||||||||| |||||||    
T  3198331 tgagcttagctcagttggtagggacattgcataatatatgcaggggttgaggttcgaac 3198389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 7064864 - 7064818
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggt 179  Q
    |||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  7064864 tgagtttaactcagttggtaggaacattgcatactatatgcaggggt 7064818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 40276508 - 40276450
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||||||| ||||||| ||| ||| | |||||| |||||||||||| ||||||||||||    
T  40276508 tgagtttagctcagttggtaggaatattgcatattatatgcaggggctgagattcgaac 40276450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 17144485 - 17144538
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    ||||||||| |  |||||||||||||||||||||||| ||  ||||||||||||    
T  17144485 ttaactcagctgttaagaacaatgcataatatatgcaaggtctgagattcgaac 17144538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 18589927 - 18589886
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  18589927 tgagcttaactcagttggtatgaacaatgcataatatatgca 18589886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 22498943 - 22498984
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  22498943 tgagcttaactcagttggtaaggacaatgcataatatatgca 22498984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 34206228 - 34206269
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  34206228 tgagtttaactcagttggtaaagacaatgcataatatatgca 34206269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 36648916 - 36648957
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| |||||||| ||||||||||||    
T  36648916 tgagtttaactcagtttgtatgaacaatgtataatatatgca 36648957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 40056650 - 40056609
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  40056650 tgagcttaactcagttggtaaggacaatgcataatatatgca 40056609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 40445984 - 40446025
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  40445984 tgagtttaactcagttgataaggacaatgcataatatatgca 40446025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 43108570 - 43108611
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  43108570 tgagcttaactcagttggtaaggacaatgcataatatatgca 43108611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 1669631 - 1669599
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  1669631 ctcagttggtaagaacaatgcataatatatgca 1669599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 11647203 - 11647239
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  11647203 ttaactcagttggtaaggacaatgcataatatatgca 11647239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 16579429 - 16579393
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  16579429 ttaactcagttggtatgaacaatgcataatatatgca 16579393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 18147718 - 18147762
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgcagg 176  Q
    ||||||||| |||||||  |||| |||||||||||||||||||||    
T  18147718 atgagtttagctcagttgataaggacaatgcataatatatgcagg 18147762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 40955556 - 40955516
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  40955556 atgagtttagctcagttagtaggaacaatgtataatatatg 40955516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 24559539 - 24559495
Alignment:
Q  130 ttatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  24559539 ttatgagcttaactcagttagtaggaacaatgcataatatatgca 24559495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 10236965 - 10236907
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||||||||||||||| |||||||||||||||||| |||||| || | ||| |||||||    
T  10236965 tgagtttaactcagttggtaagaacaatgcataatgtatgcaaggttcgaggttcgaac 10236907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 29461881 - 29461835
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggt 179  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||    
T  29461881 tgagtttaactcagttggtagggacaatgcataatatatgcaggggt 29461835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 3533068 - 3533027
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  3533068 tgagtttagctcagttagtaaggacaatgcataatatatgca 3533027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 37863437 - 37863474
Alignment:
Q  162 cataatatatgcaggggttgagattcgaactttgaaca 199  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37863437 cataaaatatgcaggggttgagattcgaactttgaaca 37863474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 1399163 - 1399221
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||||||||||||||| ||| | ||||||||| ||||||||| ||  ||||||||||||    
T  1399163 tgagtttaactcagttggtatggacaatgcatgatatatgcaaggtctgagattcgaac 1399221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 31037703 - 31037665
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  31037703 tgagtttaactcagttggtaggaacaatgcataatatat 31037665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 1285129 - 1285088
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||||||  || |||||||||||||||||||||    
T  1285129 tgagtttaactcagttgataggaacaatgcataatatatgca 1285088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 4398327 - 4398368
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||| ||||||| |||||||||||||||||||||||||    
T  4398327 tgagattagctcagttggtaagaacaatgcataatatatgca 4398368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 6384852 - 6384893
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| |||||||||||| |||| |||||||||||||||||||    
T  6384852 tgagcttaactcagttaataaggacaatgcataatatatgca 6384893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 9819609 - 9819568
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||| |||||||||||||||||||||    
T  9819609 tgagtttatctcagttggtaggaacaatgcataatatatgca 9819568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 10721534 - 10721493
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||| |||||||||||||||||||||    
T  10721534 tgagtttatctcagttggtaggaacaatgcataatatatgca 10721493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 15015240 - 15015281
Alignment:
Q  131 tatgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||| |||||||||||  ||||||||||||||||||||||    
T  15015240 tatgagcttaactcagttgataagaacaatgcataatatatg 15015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 19599146 - 19599187
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  19599146 tgagtttaactcagttggtatggacaatgcataatatatgca 19599187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 23198809 - 23198768
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  23198809 tgagtttaactcagttggtatgaacaatgcataaaatatgca 23198768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 35763706 - 35763763
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaa 190  Q
    |||| ||||||||||| ||||| |||||||||||||||||||  |  |||||||||||    
T  35763706 tgagcttaactcagttcgtaaggacaatgcataatatatgcaaagtatgagattcgaa 35763763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 2870077 - 2870025
Alignment:
Q  140 aactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaact 192  Q
    ||||||||||||||| |||||||||||||| | || |||||||  ||||||||    
T  2870077 aactcagttagtaaggacaatgcataatatgttcatgggttgaagttcgaact 2870025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 5936521 - 5936553
Alignment:
Q  155 aacaatgcataatatatgcaggggttgagattc 187  Q
    |||| ||||||||||||||||||||||||||||    
T  5936521 aacattgcataatatatgcaggggttgagattc 5936553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 29237608 - 29237576
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  29237608 ctcagttggtaagaacaatgcataatatatgca 29237576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 39280869 - 39280837
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  39280869 ctcagttggtaagaacaatgcataatatatgca 39280837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 21465612 - 21465651
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  21465612 tgagtttaactcagttagtaaggacaatgcataatatatg 21465651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 6520077 - 6520131
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaact 192  Q
    ||||||||||||||||  ||||||||||||||||||| || ||||| ||||||||    
T  6520077 ttaactcagttagtaaagacaatgcataatatatgcaaggtttgaggttcgaact 6520131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 56204943 - 56204989
Alignment:
Q  128 tcttatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||||    
T  56204943 tcttgtgagtttaactcagttggtaaggacaatgcataatatatgca 56204989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 37921747 - 37921788
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  37921747 tgagtttagctcagttagtaaggacaatgcataatatatgca 37921788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 44689498 - 44689534
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44689498 ttaactcagttggtaagaacaatgcataatatatgca 44689534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 2228452 - 2228417
Alignment:
Q  137 tttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||||||| |||||||||||||||    
T  2228452 tttaactcagttagtaagaataatgcataatatatg 2228417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 34595996 - 34595957
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  34595996 tgagtttaactcagttggtaaggacaatgcataatatatg 34595957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 39401004 - 39401051
Alignment:
Q  133 tgagtttaactcagttagtaagaacaa-tgcataatatatgcaggggt 179  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  39401004 tgagtttaactcagttggtaaggacaaatgcataatatatgcaggggt 39401051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 48223567 - 48223606
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  48223567 atgagtttatctcagttggtaagaacaatgcataatatat 48223606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 3299154 - 3299104
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgag 183  Q
    |||||||||||||||| || | |||||||||||||||||||| || |||||    
T  3299154 tgagtttaactcagttggttaaaacaatgcataatatatgcaaggtttgag 3299104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 14577567 - 14577526
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  14577567 tgagtttagctcagttggtaaggacaatgcataatatatgca 14577526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 19908693 - 19908734
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  19908693 tgagcttaactcagttggtaaggacaatgcataatatatgca 19908734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 29908057 - 29908098
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  29908057 tgagcttaactcagttggtaaggacaatgcataatatatgca 29908098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 30380531 - 30380572
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||||| |||||| ||||||||||||    
T  30380531 tgagtttaactcagttggtaaggacaatgtataatatatgca 30380572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 34247441 - 34247482
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  34247441 tgagtttagctcagttggtaaggacaatgcataatatatgca 34247482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 40071028 - 40070987
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  40071028 tgagcttaactcagttggtatgaacaatgcataatatatgca 40070987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 48824975 - 48824938
Alignment:
Q  134 gagtttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  48824975 gagtttaactcagttggtaagaacagtgcataatatat 48824938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 55430597 - 55430638
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| ||| |||||||||||||||||    
T  55430597 tgagtttaactcagttggtaggaataatgcataatatatgca 55430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 9392933 - 9392973
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||||||||||||| |||| ||||||||| |||||||    
T  9392933 atgagtttaactcagttaataaggacaatgcattatatatg 9392973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 15170154 - 15170118
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  15170154 ttaactcagttggtatgaacaatgcataatatatgca 15170118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 35727438 - 35727497
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaact 192  Q
    |||| ||||||||||| ||||||||||||||||||||||||| || ||| | ||||||||    
T  35727438 tgagcttaactcagttggtaagaacaatgcataatatatgcaaggtttggggttcgaact 35727497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 23250380 - 23250339
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  23250380 tgagcttaactcagttggtaagaacaatgcataatatatgca 23250339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 8542944 - 8542988
Alignment:
Q  128 tcttatgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||    
T  8542944 tcttgtgagtttaactcagttagtaggaacaatgcatattatatg 8542988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 29979979 - 29979943
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||| ||||||||||||||||||||||||    
T  29979979 ttaactcagttaataagaacaatgcataatatatgca 29979943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 1901506 - 1901545
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  1901506 atgagtttaactcagttagtatgaacaatgcataaaatat 1901545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 19549436 - 19549495
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    ||||| ||||||||| | ||| ||||||||||||||||||||| ||  ||||||||||||    
T  19549436 atgagcttaactcagctggtatgaacaatgcataatatatgcaaggtctgagattcgaac 19549495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 20517023 - 20517062
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  20517023 tgagtttagctcagttggtaagaacaatgcataatatatg 20517062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 22520228 - 22520259
Alignment:
Q  143 tcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||||||||||||||||||||||    
T  22520228 tcagttagtaagaacaatgcataatatatgca 22520259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 35685123 - 35685080
Alignment:
Q  131 tatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  35685123 tatgagtttagctcagttggtaaggacaatgcataatatatgca 35685080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 12353659 - 12353701
Alignment:
Q  135 agtttaactcagttagtaagaacaatgcataatatatgcaggg 177  Q
    ||||||||||| || ||||| ||||||||||||||||||||||    
T  12353659 agtttaactcaattggtaaggacaatgcataatatatgcaggg 12353701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 37119318 - 37119272
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggt 179  Q
    ||||||||||||||||  || ||||||||||||||||||||| ||||    
T  37119318 tgagtttaactcagttgatatgaacaatgcataatatatgcaagggt 37119272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 42778619 - 42778657
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatata 170  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  42778619 atgagtttaactcagttggtaaggacaatgcataatata 42778657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 4897544 - 4897585
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  4897544 tgagcttaactcagttggtaaggacaatgcataatatatgca 4897585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 4944938 - 4944979
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  4944938 tgagcttaactcagttggtaaggacaatgcataatatatgca 4944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 6141221 - 6141262
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  6141221 tgagtttatctcagttggtaaggacaatgcataatatatgca 6141262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 12124546 - 12124587
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  12124546 tgagtttagctcagttggtaaggacaatgcataatatatgca 12124587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 12757128 - 12757169
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgc 173  Q
    |||| |||||||||||| |||||||||||| |||||||||||    
T  12757128 atgaatttaactcagttggtaagaacaatgtataatatatgc 12757169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 18324954 - 18324913
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  18324954 tgagcttaactcagttggtaaggacaatgcataatatatgca 18324913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 21497668 - 21497709
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  21497668 tgagcttaactcggttggtaagaacaatgcataatatatgca 21497709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 23468104 - 23468063
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||| || |||| ||||||||||||||||||||    
T  23468104 tgagtttaactcaatttgtaacaacaatgcataatatatgca 23468063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 24393739 - 24393780
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||||||||| |||||||||||| ||||||    
T  24393739 tgagtttagctcagttagtaaggacaatgcataatgtatgca 24393780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 26133580 - 26133539
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  26133580 tgagcttaactcagttggtaaggacaatgcataatatatgca 26133539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 27314868 - 27314909
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||||||||||||||| |||||||    
T  27314868 tgagcttaactcagttggtaagaacaatgcataaaatatgca 27314909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 28771583 - 28771624
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  28771583 tgagtttagctcagttggtaaggacaatgcataatatatgca 28771624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 38443578 - 38443537
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  38443578 tgagcttaactcagttcgtatgaacaatgcataatatatgca 38443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 40546317 - 40546358
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  40546317 tgagcttagctcagttaataagaacaatgcataatatatgca 40546358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 43117250 - 43117209
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  43117250 tgagtttagctcagttggtaaggacaatgcataatatatgca 43117209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 13196706 - 13196742
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  13196706 ttaactcagttggtatgaacaatgcataatatatgca 13196742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 22267516 - 22267564
Alignment:
Q  135 agtttaactcagttagtaagaacaatgcataatatatgcaggggttgag 183  Q
    |||||||||||||| ||| | ||||||||||||||||||| || |||||    
T  22267516 agtttaactcagttggtacggacaatgcataatatatgcaaggtttgag 22267564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 22359011 - 22359047
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  22359011 ttaactcagttggtaaggacaatgcataatatatgca 22359047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 25192247 - 25192187
Alignment:
Q  131 tatgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||||| |||||||| |||||||||| |||| |||||||||||| ||  |||| |||||||    
T  25192247 tatgagcttaactcatttagtaagaaaaatgtataatatatgcaaggtatgaggttcgaac 25192187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 25395497 - 25395461
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  25395497 ttaactcagttggtaggaacaatgcataatatatgca 25395461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 32458308 - 32458344
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||  ||||||||||||||||||||||||    
T  32458308 ttaactcagttgataagaacaatgcataatatatgca 32458344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 33966327 - 33966363
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  33966327 ttaactcagttggtatgaacaatgcataatatatgca 33966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 26587396 - 26587434
Alignment:
Q  136 gtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26587396 gtttagctcagttagtaagaacaatgcataatatatgca 26587434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 32193919 - 32193878
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  32193919 tgagtttagctcagttggtaagaacaatgcataatatatgca 32193878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 3808173 - 3808137
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3808173 ttaactcagttagtaaggacaatgcataatatatgca 3808137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 15305170 - 15305111
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaact 192  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||| |||| | ||||||||    
T  15305170 tgagtttaactcagttggtaggaacattgcataatttatgcaggtgttggggttcgaact 15305111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 6196586 - 6196532
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaact 192  Q
    ||||||||||| ||||| ||||||||||||||||| |||||| | | ||||||||    
T  6196586 ttaactcagttggtaaggacaatgcataatatatgtaggggtcggggttcgaact 6196532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 21936093 - 21936052
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||||||||| |||||||||||||    
T  21936093 tgagtttagctcagttggtaagaacaattcataatatatgca 21936052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 28951400 - 28951441
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  28951400 tgagcttaactcagttggtatgaacaatgcataatatatgca 28951441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 29335635 - 29335594
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| |||||||||||||||  ||||||||||||||||||||    
T  29335635 tgagcttaactcagttagtataaacaatgcataatatatgca 29335594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 2213303 - 2213339
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| || |||||||||||||||||||||||||    
T  2213303 ttaactcaattggtaagaacaatgcataatatatgca 2213339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 4273360 - 4273396
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  4273360 ttaactcagttggtaagaacaatgcataataaatgca 4273396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 12276282 - 12276250
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  12276282 ctcagttggtaagaacaatgcataatatatgca 12276250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 15291750 - 15291690
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaactt 193  Q
    |||| |||||| |||| ||||| |||||| |||||||||||| || ||||| |||||||||    
T  15291750 tgagcttaacttagttggtaaggacaatgaataatatatgcaaggtttgaggttcgaactt 15291690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 31971535 - 31971571
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  31971535 ttaactcagttggtaaggacaatgcataatatatgca 31971571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 32149148 - 32149180
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  32149148 ctcagttggtaagaacaatgcataatatatgca 32149180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 34481469 - 34481433
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  34481469 ttaactcagttagtatgaacaatgcattatatatgca 34481433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 23653282 - 23653236
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggt 179  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  23653282 tgagcttaactcagttggtaagaacattgcataatatatgcaggggt 23653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 20223012 - 20222967
Alignment:
Q  129 cttatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||    
T  20223012 cttatgagcttaacttagttggtaagaacaatgcataatatatgca 20222967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 22486684 - 22486725
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  22486684 tgagcttaactcagttggtaagaacaatgcataatatatgca 22486725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 19939101 - 19939062
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  19939101 tgagattaactcagttggtaagaacaatgcataatatatg 19939062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 39869868 - 39869829
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  39869868 atgagtttaactcagttggtaaggacaatgcataatatat 39869829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 54230160 - 54230101
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| || ||| | |||||||    
T  54230160 atgagtttagctcagttggtaaggacaatgcataatatatgcaaggtttggggttcgaac 54230101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 21914132 - 21914090
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  21914132 atgagcttaactcagttggtaaggacaatgcataatatatgca 21914090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 25505762 - 25505720
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  25505762 atgagcttaactcagtttgtaaggacaatgcataatatatgca 25505720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 41990641 - 41990603
Alignment:
Q  136 gtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  41990641 gtttaactcagtttgtaagaacaatacataatatatgca 41990603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 50601165 - 50601207
Alignment:
Q  130 ttatgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    
T  50601165 ttatgagtttaactcagttagtatgaacaataaataatatatg 50601207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 53681937 - 53681879
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    |||| ||| ||||||| ||||||||||||||||||||||||| |  ||||| |||||||    
T  53681937 tgagcttacctcagttggtaagaacaatgcataatatatgcaagatttgaggttcgaac 53681879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 1757729 - 1757688
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  1757729 tgagcttaactcagttggtaggaacaatgcataatatatgca 1757688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 5941354 - 5941313
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  5941354 tgagcttaactcagttggtatgaacaatgcataatatatgca 5941313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 7868723 - 7868764
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||| ||||||| |||||||||||||||||||||||||    
T  7868723 tgagcttagctcagttggtaagaacaatgcataatatatgca 7868764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 8942018 - 8942059
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||| |||||||||||||||||||||    
T  8942018 tgagcttaactcagttggtatgaacaatgcataatatatgca 8942059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 13800668 - 13800709
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||| ||||||| |||||||||||||||||||||||||    
T  13800668 tgagcttagctcagttggtaagaacaatgcataatatatgca 13800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 17588363 - 17588404
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  17588363 tgagcttaactcagttggtaaggacaatgcataatatatgca 17588404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 19126550 - 19126591
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||||||||| | |||||||||||||||||    
T  19126550 tgagcttaactcagttagtaaggataatgcataatatatgca 19126591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 37376645 - 37376612
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  37376645 ttaactcagttagtaaggacaatgcataatatat 37376612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 39100477 - 39100420
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcga 189  Q
    ||||| |||||||||||  ||||||||||||||||||||| || || ||||| |||||    
T  39100477 atgagcttaactcagttgataagaacaatgcataatatatacaaggtttgaggttcga 39100420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 46634615 - 46634574
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  46634615 tgagcttaactcagatagtaaggacaatgcataatatatgca 46634574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 3177028 - 3176992
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  3177028 ttaactcagttggtaggaacaatgcataatatatgca 3176992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 35492803 - 35492835
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  35492803 ctcagttggtaagaacaatgcataatatatgca 35492835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 42269294 - 42269338
Alignment:
Q  128 tcttatgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||| |||||||| ||||||||||| | |||||||||||||||||    
T  42269294 tcttgtgagtttagctcagttagtatggacaatgcataatatatg 42269338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 50089416 - 50089388
Alignment:
Q  156 acaatgcataatatatgcaggggttgaga 184  Q
    |||||||||||||||||||||||||||||    
T  50089416 acaatgcataatatatgcaggggttgaga 50089388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 14246 - 14205
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  14246 tgagtttaactcagttggtatgaacaatgcataatatatgca 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 17221580 - 17221539
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  17221580 tgagtttaactaagttggtaagaacaatgcataatatatgca 17221539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 25365052 - 25365015
Alignment:
Q  137 tttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||| |||||||||||||||||||||||||    
T  25365052 tttaactcagttggtaagaacaatgcataatatatgca 25365015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 35951762 - 35951709
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgcaggggttgagattcgaac 191  Q
    ||||||||||||||| ||||| |||||||||||||||| || |||| |||||||    
T  35951762 ttaactcagttagtaggaacattgcataatatatgcagaggctgaggttcgaac 35951709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 8426356 - 8426416
Alignment:
Q  112 aaaaaagtgcacttagtcttatgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    |||||||| || ||| ||| |||||| |||||||||| ||||||||||| |||||||||||    
T  8426356 aaaaaagttcatttattctcatgagtataactcagttggtaagaacaatacataatatatg 8426416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 13401342 - 13401303
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  13401342 tgagtttaatttagttagtaagaacaatgcataatatatg 13401303  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 19316173 - 19316216
Alignment:
Q  128 tcttatgagtttaactcagttagtaagaacaatgcataatatat 171  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||    
T  19316173 tcttgtgagtttaactcaattagtatgaacaatgcataatatat 19316216  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 28832236 - 28832190
Alignment:
Q  128 tcttatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| |||| ||||||||||| ||| |||||||||||||||||||||    
T  28832236 tcttgtgagcttaactcagttggtatgaacaatgcataatatatgca 28832190  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 30561723 - 30561765
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||| || |||| |||||||||||||||||||||||||    
T  30561723 atgagtttagctaagttggtaagaacaatgcataatatatgca 30561765  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 33229742 - 33229700
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcag 175  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||    
T  33229742 tgagcttaactcagttggtaggaacaatgcataatatatgcag 33229700  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 3431331 - 3431372
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| ||| |||||||||||||||||    
T  3431331 tgagtttaactcagttggtaggaagaatgcataatatatgca 3431372  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 5291141 - 5291104
Alignment:
Q  140 aactcagttagtaagaacaatgcataatatatgcaggg 177  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  5291141 aactcagttggtaggaacaatgcataatatatgcaggg 5291104  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 6000203 - 6000162
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  6000203 tgagtttaactcagttggttaggacaatgcataatatatgca 6000162  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 7574178 - 7574137
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||||| |||||||||| ||||||||    
T  7574178 tgagtttaactcagttggtaaggacaatgcatagtatatgca 7574137  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 24631840 - 24631881
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||||| | |||||||||||||||||    
T  24631840 tgagtttaactcagttggtaaggataatgcataatatatgca 24631881  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 28032285 - 28032326
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  28032285 tgagtttagctcggttagtaaaaacaatgcataatatatgca 28032326  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 28039920 - 28039879
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  28039920 tgagcttaactcagttggtaaggacaatgcataatatatgca 28039879  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 29935984 - 29936025
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  29935984 tgagtttaactcagttggtatggacaatgcataatatatgca 29936025  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 29987172 - 29987131
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||| | ||| |||||||||||||||||||    
T  29987172 tgagtttaactcagttggcaaggacaatgcataatatatgca 29987131  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 34601829 - 34601784
Alignment:
Q  154 gaacaatgcataatatatgcaggggttgagattcgaactttgaaca 199  Q
    |||||||||||||||||||||||| | ||| |||||||| ||||||    
T  34601829 gaacaatgcataatatatgcagggatcgaggttcgaactctgaaca 34601784  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 39949818 - 39949851
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatat 171  Q
    ||||||||||| ||||||||||||||||||||||    
T  39949818 ttaactcagttggtaagaacaatgcataatatat 39949851  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 49875659 - 49875618
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  49875659 tgagcttaactcagttggtaaggacaatgcataatatatgca 49875618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 64733 - 64697
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| |||||||| |||||||||||||||||||    
T  64733 ttaactcaattagtaaggacaatgcataatatatgca 64697  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 1408441 - 1408477
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  1408441 ttaactcagttggtaaggacaatgcataatatatgca 1408477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 18056771 - 18056735
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  18056771 ttaactcagttggtaaggacaatgcataatatatgca 18056735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 22821062 - 22821098
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||| |||| |||||||||||||||||||||||||    
T  22821062 ttaactgagttggtaagaacaatgcataatatatgca 22821098  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 27023706 - 27023674
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  27023706 ctcagttggtaagaacaatgcataatatatgca 27023674  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 27506881 - 27506929
Alignment:
Q  135 agtttaactcagttagtaagaacaatgcataatatatgcaggggttgag 183  Q
    |||||||||||||||||||| |||||  || ||||||||||||| ||||    
T  27506881 agtttaactcagttagtaaggacaatatattatatatgcaggggctgag 27506929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 30795711 - 30795743
Alignment:
Q  142 ctcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  30795711 ctcagttggtaagaacaatgcataatatatgca 30795743  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 31890809 - 31890769
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgc 173  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  31890809 tgagtttagctcagttggtaaggacaatgcataatatatgc 31890769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 32497536 - 32497500
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  32497536 ttaactcagttggtaggaacaatgcataatatatgca 32497500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 34083337 - 34083377
Alignment:
Q  132 atgagtttaactcagttagtaagaacaatgcataatatatg 172  Q
    ||||| ||||||||| | |||||||||||||||||||||||    
T  34083337 atgagcttaactcagatggtaagaacaatgcataatatatg 34083377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 41711765 - 41711729
Alignment:
Q  138 ttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||  ||||||||||||||||||||||||    
T  41711765 ttaactcagttgataagaacaatgcataatatatgca 41711729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 52262229 - 52262185
Alignment:
Q  130 ttatgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    ||||||| ||||||||||| ||| ||||||||||||| |||||||    
T  52262229 ttatgagcttaactcagttggtatgaacaatgcataaaatatgca 52262185  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 25696 - 25739
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgcagg 176  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||    
T  25696 tgagcttagctcagttggtaagaacaatgcataatatatgcagg 25739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 12689 - 12648
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||||||||||||||| ||| ||||||||| |||||||    
T  12689 tgagtttaactcagttagtacgaataatgcataaaatatgca 12648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 25390 - 25431
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  25390 tgagcttaactcagttggtaaggacaatgcataatatatgca 25431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 34948 - 34907
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  34948 tgagcttaactcagttggtaaggacaatgcataatatatgca 34907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 239808 - 239849
Alignment:
Q  133 tgagtttaactcagttagtaagaacaatgcataatatatgca 174  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  239808 tgagtttagctcagttggtaaggacaatgcataatatatgca 239849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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