View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5887_low_4 (Length: 535)
Name: NF5887_low_4
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5887_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 170 - 502
Target Start/End: Complemental strand, 37575486 - 37575156
Alignment:
| Q |
170 |
cattcagtagtgagtttattttctgaagtttaaatttcatccaaacaaaaacacaattttaaaggttcctaacatcaaagtgaaggacaaaatttggcag |
269 |
Q |
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| T |
37575486 |
cattcggtagtgagtttattttctgaagtttaaatttcatccaaacaaaa-cacaattttaaagtttcctaacatcaaattgaaggacaaaatttggcag |
37575388 |
T |
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| Q |
270 |
tttttatataaaacattgttatatctacatgaatatggacataatatatgcatatattagtttgtatgaaagcatatagccacaccaaaaatga-tccta |
368 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
37575387 |
tttttaaataaaacattgttatatctacatgaatatggacataatat--gcatatattagtttgtatgaaagcatatagcaacaccaaaaatgaatccta |
37575290 |
T |
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| Q |
369 |
accgacacaaaattagagccttgggggtcccacaacaacatacaagaagtcgtactactactgaggttgtagctaggtgcagtaagttggagaatatcag |
468 |
Q |
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| T |
37575289 |
accgacacaaaattagagccttgggggtcccacaacaacatacaagaagtcgtactactactgaggttgtagctaggtgcagtaagttggagaatatcgg |
37575190 |
T |
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| Q |
469 |
agcttatttgtaagttgttacataaagcgaaaaa |
502 |
Q |
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| T |
37575189 |
agtttatttgtaagttgttacataaagcgaaaaa |
37575156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 37576463 - 37576304
Alignment:
| Q |
8 |
cagcacagaaccatttttggtaacgcttttcagtaaaaaagattacaagttttaaagtttgaaccacatctcgcaagcttgaaatatttttggctaataa |
107 |
Q |
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| T |
37576463 |
cagcacagaaccatttttggtaacgcttttcagtaaaaaagattacaagttttaaactttgaaccatatctcgcaagcttgaaatatttttggctaataa |
37576364 |
T |
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| Q |
108 |
aaag--tatgtgtatgaaatatatgcctgagatataagataacaaaaagtcatgaaaact |
165 |
Q |
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| T |
37576363 |
aaagtatatgtgtatgtactatatgcctgagatataagataacaaaaagtcatgaaaact |
37576304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 8213236 - 8213113
Alignment:
| Q |
113 |
atgtgtatgaaatatatgcctgagatataagataacaaaaagtcatgaaaac---taactcattcagtagtgagtttattttctgaagtttaaatttcat |
209 |
Q |
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| T |
8213236 |
atgtgtatgcactatattcttgtgatacaggataacaaaaagtcatgaaaatcattaactcgttaagtaacgagtttattttcttaagtttaaaattcat |
8213137 |
T |
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| Q |
210 |
ccaaacaaaaacacaattttaaag |
233 |
Q |
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| T |
8213136 |
ccaaacaaaaacataattataaag |
8213113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 295 - 503
Target Start/End: Complemental strand, 54683886 - 54683678
Alignment:
| Q |
295 |
tacatgaatatggacataatatatgcatatattagtttgtatgaaagcatatagccacaccaaaaatga--------tcctaaccgacacaaaattagag |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |||||||| ||||||||||||| |
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| T |
54683886 |
tacatgaatatggacataatatatgcatatattagtttgtatgaaatcatatagcaacacaaaaaatgaatcctaagtcctaaccaacacaaaattagaa |
54683787 |
T |
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| Q |
387 |
ccttgggggtcccacaacaacatacaagaagtcgtactactactgaggttg----tagctaggtgcagtaagttggagaatatcagagcttatttgtaag |
482 |
Q |
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| T |
54683786 |
ccttgggggtctcacaacaac--acaagaagtcgta-------aaaggttgtagctagctagctgcagtaagttggagaatatcagagcttgcttgtaag |
54683696 |
T |
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| Q |
483 |
ttgttacataaagcgaaaaaa |
503 |
Q |
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||| ||||||||||||||| |
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| T |
54683695 |
ttg---cataaagcgaaaaaa |
54683678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 37167312 - 37167380
Alignment:
| Q |
295 |
tacatgaatatggacataatatatgcatatattagtttgtatgaaagcatatagccacaccaaaaatga |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
37167312 |
tacatgaatatggacataatatatgcatatattagtttgtatgaaatcatatagcaacacaaaaaatga |
37167380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 37167463 - 37167517
Alignment:
| Q |
446 |
tgcagtaagttggagaatatcagagcttatttgtaagttgttacataaagcgaaaaaa |
503 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
37167463 |
tgcagtaagttggagaatatcagagcttgcttgtaa---attacataaagcgaaaaaa |
37167517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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