View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5888-Insertion-2 (Length: 454)
Name: NF5888-Insertion-2
Description: NF5888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5888-Insertion-2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 454
Target Start/End: Original strand, 35043733 - 35044163
Alignment:
| Q |
9 |
ggcagatagtgctcctccatcccttttatatacgttcaaatctacacctgcagagaaaccaacatcacacattacactacaccgctagctatagtactcc |
108 |
Q |
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| T |
35043733 |
ggcagatagtgctcctccatcccttttatatacgttcaaatctacacctgcagagaaaccaacatcacacattacactacaccgctagctatagtactcc |
35043832 |
T |
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| Q |
109 |
atttctaacaccaagcaaatgatgaataatttgctttcaccttcgacccttcaaccatttactatttgcaccactttgttgtttcttttcgttctctttt |
208 |
Q |
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| T |
35043833 |
atttctaacaccaagcaaatgatgaataatttgctttcaccctcgacccttcaaccatttactatttgcaccactttgttgtttcttttcgttctctttt |
35043932 |
T |
|
| Q |
209 |
ggctactgagaagccgccgcattaatactagtgtagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctctt |
308 |
Q |
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| T |
35043933 |
ggctactgagaagccgccgcattaatactagtgtagct---------------ccagaagccggtggagcttggcctttgatcggccacctccacctctt |
35044017 |
T |
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| Q |
309 |
aggtggatccgagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacactagttata |
408 |
Q |
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| T |
35044018 |
aggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacactagttata |
35044117 |
T |
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| Q |
409 |
agcagttgtgaaatggcgaaacaatgcttcaccgtaaacgatagag |
454 |
Q |
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| T |
35044118 |
agcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagag |
35044163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 244 - 446
Target Start/End: Original strand, 35029678 - 35029887
Alignment:
| Q |
244 |
gcttcaaagacaccaccacc------agaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagccacctcatgtcacct |
337 |
Q |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttacct |
35029777 |
T |
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| Q |
338 |
tagggaagctagccgataaatacggacctat-cttcacctttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgct |
436 |
Q |
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|||| || ||||||| ||||||||||| || ||||||| ||||||| |||||||||||||| ||||| ||||||||| |||||||| ||||||||| | |
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| T |
35029778 |
taggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtt |
35029877 |
T |
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| Q |
437 |
tcaccgtaaa |
446 |
Q |
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| T |
35029878 |
tcaccgtaaa |
35029887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 242 - 449
Target Start/End: Original strand, 35019594 - 35019798
Alignment:
| Q |
242 |
tagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagccacctcatgtcaccttagg |
341 |
Q |
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| T |
35019594 |
tagcttcaaagacaccaccg---gaagccggcggatcatggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttagg |
35019690 |
T |
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| Q |
342 |
gaagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcacc |
441 |
Q |
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| T |
35019691 |
aaacttagccgacaaatacggacccatcttcaccgttcgtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttacc |
35019790 |
T |
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| Q |
442 |
gtaaacga |
449 |
Q |
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| T |
35019791 |
gtaaacga |
35019798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 449
Target Start/End: Original strand, 35035791 - 35035997
Alignment:
| Q |
243 |
agcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagccacctcatgtcaccttaggg |
342 |
Q |
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|||||||| |||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||| ||| | | |||| || ||||||| || |
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| T |
35035791 |
agcttcaatgacaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttggga |
35035890 |
T |
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| Q |
343 |
aagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcaccg |
442 |
Q |
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|| ||||||| ||||||||| | |||||||| | ||||| |||||||| ||| ||||| | |||||||| ||||| || | ||| || ||||| | |
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| T |
35035891 |
aacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactg |
35035990 |
T |
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| Q |
443 |
taaacga |
449 |
Q |
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| T |
35035991 |
taaacga |
35035997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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