View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5888_high_1 (Length: 256)
Name: NF5888_high_1
Description: NF5888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5888_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 36417316 - 36417549
Alignment:
| Q |
1 |
aagagaaacacactgcactttaacccaagaactttaaatctgatgtcttatttataaagtatttaacgttcannnnnnnatttgatgtaaaatatattac |
100 |
Q |
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| T |
36417316 |
aagagaaacacagtgcactttaacccaaaaactttaaatctgatgtcttatttataaaatatttaacattca-------------tgtaaaatatattac |
36417402 |
T |
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| Q |
101 |
ttgcacattactcacacttgatatatcaatatttctaaatatcttttcaataaagcatgtctagataacttattttggtaaagatggataatcgacaaat |
200 |
Q |
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| T |
36417403 |
tcgcacattactcacacttggtatatcaatatttctaaatatcttttcaataaagcatgtctagataacttattttggtaaagatggataatcgacaaat |
36417502 |
T |
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| Q |
201 |
atgttaggtaaatggaataaaaagaaacgtaggtatttaatattctt |
247 |
Q |
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| T |
36417503 |
atgttaggtaaatggaataaaaagaaacgtaggtatttaattttctt |
36417549 |
T |
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