View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5888_low_1 (Length: 415)
Name: NF5888_low_1
Description: NF5888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5888_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 13212550 - 13212421
Alignment:
| Q |
20 |
aaggacaggtcgtcggtggtagcgtggtgggaccgttgttagcttccggtccggttgttatcatggcagcttcctttggaaatgctgcttatgaaaggct |
119 |
Q |
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| T |
13212550 |
aaggacaggtcgtcggtggtagcgtggtgggaccgttgttagcttccggtccggttgttatcatggcagcttcctttggaaatgctgcttatgaaaggct |
13212451 |
T |
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| Q |
120 |
acctttagaagatgaagaaacaccagtgaa |
149 |
Q |
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| T |
13212450 |
acctttagaagatgaagaaacaccagtgaa |
13212421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 10000291 - 10000401
Alignment:
| Q |
155 |
agaacctgtgaaacttctgagtcatggtttaattggttaaaatatgcaacaaatataccggttcaaccaaccctggttgaaatggttcagccccgattca |
254 |
Q |
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| T |
10000291 |
agaaccggtgaaacttctgagtcatgatttaattggttaaaatatgcagcgaatacaccggttcaaccaactc-ggttgaaatggttcagtcccgattca |
10000389 |
T |
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| Q |
255 |
atccggttcaac |
266 |
Q |
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| T |
10000390 |
atccggttcaac |
10000401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 10001059 - 10001135
Alignment:
| Q |
323 |
acctccttcttatacttctccatattattgcatgcctttagtagtttctgaattatctctagctgtcattttataat |
399 |
Q |
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| T |
10001059 |
acctccttcttatacttctccatattgttgcatgccttcagtagtttctgaattatctctagctgtcattttataat |
10001135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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