View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5888_low_4 (Length: 218)
Name: NF5888_low_4
Description: NF5888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5888_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 4636467 - 4636653
Alignment:
| Q |
18 |
aggttatataaacaaagaaagagaactaagactataggttcttgctgcaatgaatttaatttggtatttttaacaaattttgaatccatatccttctatg |
117 |
Q |
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| T |
4636467 |
aggttatataaacaaagaaagagaactaagactataggttcttgctgcaatgaatttaatttggtatttttaacaaattttgaatccatatccttctatg |
4636566 |
T |
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| Q |
118 |
ttcatagcttttataaattaaattttgtttattctaatctaatactccatataagttgatatcatttctattgttgatttgattttg |
204 |
Q |
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| T |
4636567 |
ttcatagcttttataaattaaatttttgttattctaatctaatactccatataagttgatatcatttccattgttgatttgattttg |
4636653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4644491 - 4644688
Alignment:
| Q |
1 |
aaaactcacgagtttgcaggttatataaacaaagaaagagaactaagactataggttcttgctgcaatgaatttaatttggtatttttaacaaattttga |
100 |
Q |
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| T |
4644491 |
aaaactcacgagtttgcaggttatgtaaacaaagaaagagaactaagactataggttcttgctgcaatgaatttaatttggtctttttaacaaattttga |
4644590 |
T |
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| Q |
101 |
atccatatccttctatgttcatagcttttataaattaaattttgtttattctaatctaatactccatataagttgatatcatttctattgttgatttgat |
200 |
Q |
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| T |
4644591 |
atccatatcatgctatgtttatagcttttataaattatattttggttattctaatctaat-----atatatgttgatatcagttccattgttgatttgat |
4644685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 1798092 - 1798151
Alignment:
| Q |
96 |
tttgaatccatatccttctatgttcatagcttttataaattaaattttgtttattctaat |
155 |
Q |
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| T |
1798092 |
tttgaatccatatcctgctatgttcataacttttataaattaaattttggttattctaat |
1798151 |
T |
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