View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5889-Insertion-1 (Length: 266)
Name: NF5889-Insertion-1
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5889-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 52549056 - 52548938
Alignment:
| Q |
9 |
tatgtattcatttcatgccttgtaaactctgactttagtgtatcattgttttggcctattatcatggtaggaactaactttgatcgaacttctggtggac |
108 |
Q |
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| T |
52549056 |
tatgtattcatttcatgccttgtaaactctgactttagtgtatcattgttttggcctagtatcatgg-aggaactaactttgatcgaacttctggtggac |
52548958 |
T |
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| Q |
109 |
ccttcattgctacaagttat |
128 |
Q |
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| T |
52548957 |
ccttcattgctacaagttat |
52548938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 52548933 - 52548867
Alignment:
| Q |
201 |
cttgcttatagtgacattggaagggagtgtcacattagtataaagtttgttc-actattataactat |
266 |
Q |
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| T |
52548933 |
cttgcttagagtgacattggaagggagtttcacattagtatgaagtttgttcaactattataactat |
52548867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 40086744 - 40086806
Alignment:
| Q |
77 |
aggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgc |
139 |
Q |
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| T |
40086744 |
aggaaccaactttgaccgaagtactggaggaccattcattgcaacaagttatgattttgatgc |
40086806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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