View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5889_low_2 (Length: 245)
Name: NF5889_low_2
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5889_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10266034 - 10265850
Alignment:
| Q |
1 |
ttttacaagaaaataccaactaaagtagcgttgcattggagaggaataatcatgacttagtgcagcacgaataacatgagagaaatgacaagggaatcca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
10266034 |
ttttacaagaaaataccaactaaagtggcgttgcatcggagaggaataatcatgacttagtgcagcacgaataacatgagagaaatgacaagaggatcca |
10265935 |
T |
|
| Q |
101 |
aatcccagacttgggtagtatgatggagagaatgaaattttgttcatg-ggggtggtttagttgtaaaaagaaaggaataataac |
184 |
Q |
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| T |
10265934 |
aatcccagacttgggtagtatgatggagagaataaaattttgttcatggggggtggtttagttgtaaaaagaaaggaataataac |
10265850 |
T |
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Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10285059 - 10284875
Alignment:
| Q |
1 |
ttttacaagaaaataccaactaaagtagcgttgcattggagaggaataatcatgacttagtgcagcacgaataacatgagagaaatgacaagggaatcca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||| |
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| T |
10285059 |
ttttacaagaaaataccaactaaagtggcgttgcatcggagaggaataatcatgacttaatgcagcacgaataacatgagagaaatgataagaggatcca |
10284960 |
T |
|
| Q |
101 |
aatcccagacttgggtagtatgatggagagaatgaaattttgttcatg-ggggtggtttagttgtaaaaagaaaggaataataac |
184 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10284959 |
aatcccagacttgggtagtatgatggagagaataaaattttgttcatggggggtggtttagttgtaaaaagaaaggaataataac |
10284875 |
T |
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