View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5889_low_4 (Length: 206)

Name: NF5889_low_4
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5889_low_4
NF5889_low_4
[»] chr8 (2 HSPs)
chr8 (81-186)||(12876503-12876608)
chr8 (81-114)||(38644371-38644404)
[»] chr4 (3 HSPs)
chr4 (81-112)||(32912365-32912396)
chr4 (85-114)||(5047750-5047779)
chr4 (81-113)||(19440433-19440465)
[»] chr3 (2 HSPs)
chr3 (82-112)||(22622478-22622508)
chr3 (81-114)||(33378543-33378576)
[»] chr5 (1 HSPs)
chr5 (81-113)||(11898209-11898241)
[»] chr2 (1 HSPs)
chr2 (82-114)||(41961235-41961267)
[»] chr1 (1 HSPs)
chr1 (81-113)||(34012136-34012168)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 12876503 - 12876608
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctcccaataaatttaacaatctggatttcacttcacctacaaatatagactctattacaatcgaacttgaggt 180  Q
    ||||||||||||| |  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12876503 gtcagtttcctgattataccgtataagctcccaataaatttaacaatctagatttcacttcacctacaaatatagactctattacattcgaacttgaggt 12876602  T
Q  181 agatat 186  Q
    ||||||    
T  12876603 agatat 12876608  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 38644371 - 38644404
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctcccaa 114  Q
    ||||||||| ||||||||||||||||||||||||    
T  38644371 gtcagtttcatgactgcaccgtaaaagctcccaa 38644404  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 112
Target Start/End: Complemental strand, 32912396 - 32912365
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctccc 112  Q
    ||||||||||||||||||||||||||||||||    
T  32912396 gtcagtttcctgactgcaccgtaaaagctccc 32912365  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 5047779 - 5047750
Alignment:
Q  85 gtttcctgactgcaccgtaaaagctcccaa 114  Q
    ||||||||||||||||||||||||||||||    
T  5047779 gtttcctgactgcaccgtaaaagctcccaa 5047750  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 19440465 - 19440433
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctccca 113  Q
    ||||||||||||||||||||||| |||||||||    
T  19440465 gtcagtttcctgactgcaccgtagaagctccca 19440433  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 22622508 - 22622478
Alignment:
Q  82 tcagtttcctgactgcaccgtaaaagctccc 112  Q
    |||||||||||||||||||||||||||||||    
T  22622508 tcagtttcctgactgcaccgtaaaagctccc 22622478  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 33378576 - 33378543
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctcccaa 114  Q
    ||||||||||||||||||||||| ||||||||||    
T  33378576 gtcagtttcctgactgcaccgtagaagctcccaa 33378543  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 11898209 - 11898241
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctccca 113  Q
    ||||||||||||||||||||||| |||||||||    
T  11898209 gtcagtttcctgactgcaccgtagaagctccca 11898241  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 41961235 - 41961267
Alignment:
Q  82 tcagtttcctgactgcaccgtaaaagctcccaa 114  Q
    |||||||||||||||||||||| ||||||||||    
T  41961235 tcagtttcctgactgcaccgtagaagctcccaa 41961267  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 34012168 - 34012136
Alignment:
Q  81 gtcagtttcctgactgcaccgtaaaagctccca 113  Q
    ||||||||||||||||||||||| |||||||||    
T  34012168 gtcagtttcctgactgcaccgtagaagctccca 34012136  T

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