View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890-Insertion-3 (Length: 636)
Name: NF5890-Insertion-3
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 198 - 531
Target Start/End: Complemental strand, 52548933 - 52548586
Alignment:
| Q |
198 |
cttgcttagagtgacattggaagggagtttcacattagtatgaagtttgttcaactattataactatttgtatagaagttagagaaaagtaaaatggaag |
297 |
Q |
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| T |
52548933 |
cttgcttagagtgacattggaagggagtttcacattagtatgaagtttgttcaactattataactatttgtatagaagttagagaaaagtaaaatggaag |
52548834 |
T |
|
| Q |
298 |
ttatcttgattaagaaagaatgaatacctaagacttatatagtcaatgagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaa |
397 |
Q |
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| T |
52548833 |
ttatattgattaagaaagaatgaatacctaagacttatatagtcaatgagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaa |
52548734 |
T |
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| Q |
398 |
attgatttctcattcctgaattagaagagtataagatacttatatacgcatattgagctctatgttagcttattgtatg--------------ttgctaa |
483 |
Q |
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| T |
52548733 |
attgatttctcattactgaattagaagagtataagatacttatatacgcatattgagctctatgttagcttattgtatgtaacctacattagattgctaa |
52548634 |
T |
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| Q |
484 |
cacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac |
531 |
Q |
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| T |
52548633 |
cacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac |
52548586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 52549056 - 52548938
Alignment:
| Q |
9 |
tatgtattcatttcatgccttgtaaactctgactttagtgtatcattgttttggcctagtatcatggaggaactaactttgatcgaacttctggtggacc |
108 |
Q |
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| T |
52549056 |
tatgtattcatttcatgccttgtaaactctgactttagtgtatcattgttttggcctagtatcatggaggaactaactttgatcgaacttctggtggacc |
52548957 |
T |
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| Q |
109 |
cttcattgctacaagttat |
127 |
Q |
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| T |
52548956 |
cttcattgctacaagttat |
52548938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 531
Target Start/End: Original strand, 26619274 - 26619328
Alignment:
| Q |
477 |
ttgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac |
531 |
Q |
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| T |
26619274 |
ttgctaacacataacaaactcaaagctatgcaatgattaagtaatcatttctaac |
26619328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 26619219 - 26619255
Alignment:
| Q |
436 |
cttatatacgcatattgagctctatgttagcttattg |
472 |
Q |
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| T |
26619219 |
cttatatacgcatattgaactctatgatagcttattg |
26619255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 42988787 - 42988695
Alignment:
| Q |
66 |
agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggta |
158 |
Q |
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| T |
42988787 |
agtatcatggaggaacaaattttggtagaacagctggtggtcctttcattgctacaagctatgactatgatgcacctcttgatgaatatggta |
42988695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 40060835 - 40060930
Alignment:
| Q |
66 |
agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatgt |
161 |
Q |
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| T |
40060835 |
agtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgt |
40060930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 40086734 - 40086828
Alignment:
| Q |
66 |
agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatg |
160 |
Q |
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| T |
40086734 |
agtaccatggaggaaccaactttgaccgaagtactggaggaccattcattgcaacaagttatgattttgatgcaccgattgatgagtatggtatg |
40086828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 40078961 - 40079055
Alignment:
| Q |
66 |
agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatg |
160 |
Q |
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| T |
40078961 |
agtaccatggaggaaccaactttgaccgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatg |
40079055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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