View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890-Insertion-4 (Length: 498)
Name: NF5890-Insertion-4
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 7346641 - 7347117
Alignment:
| Q |
9 |
tggttacattcgatcacttgtatctttctcaattattactagtgtctatgtggcggtgtgtactagtgtcatgtaccgtgtccgtgttagtgctttttag |
108 |
Q |
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| T |
7346641 |
tggttacattcgatcacttgtatctttttcaattattactagtggttatgtggcggtgtgtactagtgtcatgtaccgtgtccgtgttggtgctttttag |
7346740 |
T |
|
| Q |
109 |
gtcatgacatgtgcaatctactttgtatattttgttaaagatttgatttgatgggttgttttgttcatgtatttgtgttgtgtagtttctatgagctatg |
208 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346741 |
gtcatgacatg-gcaatctactttgtatgttttgttaaagatttgatttgatgggttgttttgttcatgtatttgtgttgtgtagtttctatgagctatg |
7346839 |
T |
|
| Q |
209 |
taagggcgatgtttgtaattgaagagttgtctagtgtttgatatgtccaggtgtctgaaaccaacacgacattgatacatgtgtttatacatcagtgtcg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7346840 |
taagggcgatgtttgtaattgaagagttgtctagtgtttgatatgtctaggtgtctgaaaccaacacgacattgatacatgtgtttatatgtcagtgtcg |
7346939 |
T |
|
| Q |
309 |
atgtcatgctagtgcttaaaaggttattagcaatctattctgtttagtccatgtatttgtgtgctgtgtagttgttatgagc----taacaacgacattt |
404 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
7346940 |
atgtcatgctagtgcttaataggttattagcaatctattctgtttagtccatgtatttgtgtgctgtgtagttgttatgagctatgtaacagcgacattt |
7347039 |
T |
|
| Q |
405 |
ccaattgaaggcatgtccagtgtctgacacactaacgtgataccaatacatatggttacattcaatcacttatatata |
482 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7347040 |
ccaattgaaggcatgtctagtgtctgacacactaacgcgataccaatacatatggttacattcaatcacttatatata |
7347117 |
T |
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