View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_high_3 (Length: 532)
Name: NF5890_high_3
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Complemental strand, 7347148 - 7346641
Alignment:
| Q |
8 |
cagcacagagacccgtaataaattaaaaagatatatatataagtgattgaatgtaaccatatgtattggtatcacgttagtgtgtcagacactggacatg |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
7347148 |
cagcacagagacccgtaataaattaaaaagttatatata--agtgattgaatgtaaccatatgtattggtatcgcgttagtgtgtcagacactagacatg |
7347051 |
T |
|
| Q |
108 |
ccttcaattggaaatgtcgttgtta----gctcataacaactacacagcacacaaatacatggactaaacagaatagattgctaataaccttttaagcac |
203 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7347050 |
ccttcaattggaaatgtcgctgttacatagctcataacaactacacagcacacaaatacatggactaaacagaatagattgctaataacctattaagcac |
7346951 |
T |
|
| Q |
204 |
tagcatgacatcgacactgatgtataaacacatgtatcaatgtcgtgttggtttcagacacctggacatatcaaacactagacaactcttcaattacaaa |
303 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7346950 |
tagcatgacatcgacactgacatataaacacatgtatcaatgtcgtgttggtttcagacacctagacatatcaaacactagacaactcttcaattacaaa |
7346851 |
T |
|
| Q |
304 |
catcgcccttacatagctcatagaaactacacaacacaaatacatgaacaaaacaacccatcaaatcaaatctttaacaaaatatacaaagtagattgca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7346850 |
catcgcccttacatagctcatagaaactacacaacacaaatacatgaacaaaacaacccatcaaatcaaatctttaacaaaacatacaaagtagattgc- |
7346752 |
T |
|
| Q |
404 |
catgtcatgacctaaaaagcactaacacggacacggtacatgacactagtacacaccgccacatagacactagtaataattgagaaagatacaagtgatc |
503 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
7346751 |
catgtcatgacctaaaaagcaccaacacggacacggtacatgacactagtacacaccgccacataaccactagtaataattgaaaaagatacaagtgatc |
7346652 |
T |
|
| Q |
504 |
gaatgtaacca |
514 |
Q |
| |
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||||||||||| |
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| T |
7346651 |
gaatgtaacca |
7346641 |
T |
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