View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_high_4 (Length: 476)
Name: NF5890_high_4
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 38931186 - 38931593
Alignment:
| Q |
1 |
ctgttcgcattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcaatgta--ac |
98 |
Q |
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| T |
38931186 |
ctgttcgcattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcagtgtctgac |
38931285 |
T |
|
| Q |
99 |
acgtgacttctgcaatacagaattgcagaatgatgcacttatttagttaccttgtagaggtaaacccattgggcactaagatgaagcaatttgagaactg |
198 |
Q |
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| T |
38931286 |
acgtgacttctgcaattcataattgcagaatgatgcacttatttaattaccttgtagaggtaaacccattgggcactaagatgaagcaatttgagaactg |
38931385 |
T |
|
| Q |
199 |
ggagagtcaaactattgacattcgttatacgacctgctcttgggttaaacacatcggcacgtgaaggatcagctatgttctcatgaagcttcaatgtgca |
298 |
Q |
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| T |
38931386 |
ggagagtcaaactattgacattcgttatacgacctgctcttgggttaaacacatcggcacgtgaaggatcagctatgttctcatgaagcttcaatgtgca |
38931485 |
T |
|
| Q |
299 |
aacggtttcatcgaagaagttgtgttgttcttcatgttctctggttcttgttctctcaccatggcttctttctttttcaccatggtgacaatgctcttta |
398 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931486 |
aacagtttcatcgaagaagttgtgttgtccttcatgttctctggttcttgttctctcaccatggcttctttctttttcaccatggtgacaatgctcttta |
38931585 |
T |
|
| Q |
399 |
gtttttgt |
406 |
Q |
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|||||||| |
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| T |
38931586 |
gtttttgt |
38931593 |
T |
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