View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_high_5 (Length: 463)
Name: NF5890_high_5
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 105 - 448
Target Start/End: Original strand, 43114196 - 43114539
Alignment:
| Q |
105 |
ctcttgaatatgcaaaaatcataagaaaacatttgattacaagctttgctttcacaccccataataaatggcaaaaagactactaattagtttgtgacct |
204 |
Q |
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| T |
43114196 |
ctcttgaatatgcaaaaatcataagaaaacatttgattacaagctttgctttcacaccccataataaatggcaaaaagactactaattagtttgtgacct |
43114295 |
T |
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| Q |
205 |
gcacaaaatgtaattaattatgtaaagagaaacaaatgaaaatagttaatgatgatgttaataataacatataagacttttatcaacttagattagatca |
304 |
Q |
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| T |
43114296 |
gcacaaaatgtaattaattgtgtaaagagaaacaaatgaaaatagttaatgatgatgttaataataacatataagacttttatcaacttagattagatca |
43114395 |
T |
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| Q |
305 |
aaagggtgtaaccnnnnnnngattagatcaaaagggtttttagaaaaaggtgcaattaaggtacttttannnnnnnggtagtaatgctactctttaattt |
404 |
Q |
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| T |
43114396 |
aaagggtgtaaccaaaaaaagattagatcaaaagggtttttagaaaaaggtgcaattaaggtacttttatttttttggtagtaatgctactctttaattt |
43114495 |
T |
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| Q |
405 |
aatcttgtannnnnnnncctaactcaaagtggataagtattatt |
448 |
Q |
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| T |
43114496 |
aatcttgtattttttttcctaactcaaagtggataagtcttatt |
43114539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 43114096 - 43114135
Alignment:
| Q |
5 |
gagcagagataaaaaaccatatccaaccagaaggtaactg |
44 |
Q |
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| T |
43114096 |
gagcaaagataaaaaaccatatccaaccagaaggtaactg |
43114135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 43467206 - 43467144
Alignment:
| Q |
190 |
attagtttgtgacctgcacaaaatgtaattaattatgtaaagagaaacaaatgaaaatagttaat |
254 |
Q |
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| T |
43467206 |
attagtttgtgacctggacaaaatgtaattaat--cttcaagagaaacaaatgcaaatagttaat |
43467144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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