View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_high_6 (Length: 439)
Name: NF5890_high_6
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 32730848 - 32730442
Alignment:
| Q |
19 |
aaacattgtacctttgattcatggttatctcgaaataagtttagatgagttagaatattttttgtaataatttttagaaaaatgcaataaacttggaaga |
118 |
Q |
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| T |
32730848 |
aaacattgtacctttgattcatggttatctcgaaataagtttagatgagttagaatattttttgtaataatttttagaaaaatgcaataaacttggaaga |
32730749 |
T |
|
| Q |
119 |
agcatactcttccaaatatcattcaaaatatacacttttatttcgcatattgttcatataaatccataagcaattagcacttttgatattctaaaaatca |
218 |
Q |
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| T |
32730748 |
agcatactcttccaaatatcattcaaaatatacacttttatttcgcatattgttcatataaatccataagcaattagcacttttgatattctaaaaatca |
32730649 |
T |
|
| Q |
219 |
ctcatttgaaacacccaatgttatagaccatagcaatattccattcttcaactatcatttcatacaggattgctatgcattgttgcattgtattaccaaa |
318 |
Q |
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| T |
32730648 |
ctcatttgaaacacccaatgtcatagaccatagcaatattccattcttcaactatcatttcatacaggattgctatgcattgttgcattgtattaccaaa |
32730549 |
T |
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| Q |
319 |
tcatagctaactacaaaattgatctatcttgtttctaataagttgtcaccacacgccttgtttttaaagttgtcttgtcaattcacaatatttatttctt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32730548 |
tcatagctaactacaaaattgatctatcttgtttctattaagttgtcaccacacgccttgtttttaaagttgtcttgtcaattcacaatatttatttctt |
32730449 |
T |
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| Q |
419 |
tgttatt |
425 |
Q |
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||||||| |
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| T |
32730448 |
tgttatt |
32730442 |
T |
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