View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_high_7 (Length: 378)
Name: NF5890_high_7
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 45929961 - 45930323
Alignment:
| Q |
1 |
aaatccctatattgatttattgttttcaggaatgggttacggatagtccattcattatatcacctagaattacttttgaggtcagtgtgcgtcttcttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45929961 |
aaatccctatattgatttattgttttcaggaatgggttacggatagtccattcattatatcacctagaattacttttgaggtcagtgtgcgtcttcttgg |
45930060 |
T |
|
| Q |
101 |
agggctgatggccttggggtatacaattgcagcaatcctgaaaagaagcagccatgtctttcacgatgataaagtatccataaaaactgactggcttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45930061 |
agggctgatggccttggggtatacaattgcagcaatcctgaaaagaagcagccatgtctttcacgatgataaagtatccataaaaactgactggctcgaa |
45930160 |
T |
|
| Q |
201 |
cagcttaatcgccaatatgtccaggtacaacagcatattgtttgtatctctcccttcttacttttttctatgcttaatcgtcaatattgtctggtacaaa |
300 |
Q |
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| T |
45930161 |
cagcttaatcgccaatatgtccaggtacaacagcatattgtttgtatctctcccttcttacttttttctatgcttaatcgtcaatattgtctggtacaaa |
45930260 |
T |
|
| Q |
301 |
agaaattccaatactagcttgaccctcacaacccgctcttttccctctattcttttgttgagt |
363 |
Q |
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| T |
45930261 |
agaaattccaatactagctcgaccctcacaacccgctcttttccctctattcttttgttgagt |
45930323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 28076100 - 28076238
Alignment:
| Q |
23 |
ttttcaggaatgggttacggatagtccattcattatatcacctagaattacttttgaggtcagtgtgcgtcttcttggagggctgatggccttggggtat |
122 |
Q |
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| T |
28076100 |
ttttcaggaatgggtgacagatagtccctttgtcatatcaccgagaattacttttgaggtcagtgtgcgcctccttggtggactaatggccttgggatat |
28076199 |
T |
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| Q |
123 |
acaattgcagcaatcctgaaaagaagcagccatgtcttt |
161 |
Q |
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|| || || | ||||| || |||| ||| ||||||||| |
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| T |
28076200 |
acgatagctactatccttaagagaaacagtcatgtcttt |
28076238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 29536842 - 29536945
Alignment:
| Q |
57 |
atatcacctagaattacttttgaggtcagtgtgcgtcttcttggagggctgatggccttggggtatacaattgcagcaatcctgaaaagaagcagccatg |
156 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||| | || || ||||| ||| | || || |||||||| ||||||| |
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| T |
29536842 |
atatcaccgagaattacttttgcggtcagtgtgcgtcttcttggtggactgatggcccttggatacacaatagcaactattcttaaaagaagtagccatg |
29536941 |
T |
|
| Q |
157 |
tctt |
160 |
Q |
| |
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|||| |
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|
| T |
29536942 |
tctt |
29536945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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