View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_high_9 (Length: 237)
Name: NF5890_high_9
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48323402 - 48323621
Alignment:
| Q |
1 |
catcactatagcatggagtgttgcaatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtgcaaggtaacggtcaatttgaaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48323402 |
catcactatagcatggagtgttgcaatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtccaaggtaacggtcaatttgaaacca |
48323501 |
T |
|
| Q |
101 |
ttgagacccttttttccattgtgaattcttaatctcattggcttccacaaaggtttcatttgagttcattagataagtataaattgtggagaaattgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48323502 |
ttgagacccttttttccattgtgaattcttaatctcattggcttccacaaaggtttcatttgagttcattagataagtataaattgtggagaaattgaac |
48323601 |
T |
|
| Q |
201 |
aatggtatacatgattctga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
48323602 |
aatggtatacatgattctga |
48323621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 31266547 - 31266671
Alignment:
| Q |
1 |
catcactatagcatggagtgttgcaatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtgcaaggtaacggtcaatttgaaacca |
100 |
Q |
| |
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|||||||||||||||||| || ||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||| |||| |||||||||||||| |
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| T |
31266547 |
catcactatagcatggagggtcacaatagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaacca |
31266646 |
T |
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| Q |
101 |
ttgagacccttttttccattgtgaa |
125 |
Q |
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||| ||||||||| ||||||||||| |
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| T |
31266647 |
ttgtgacccttttctccattgtgaa |
31266671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 31266732 - 31266817
Alignment:
| Q |
135 |
tcattggcttccacaaaggtttcatttgagttcattagataagtataaattgtggagaaattgaacaatggtatacatgattctga |
220 |
Q |
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|||| ||||||||||||||||| | |||||||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| |
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| T |
31266732 |
tcataggcttccacaaaggttttctctgagttcattaggtaagtgtagattgtagagaaattgaacaatggtatgcatgattctga |
31266817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 54474496 - 54474620
Alignment:
| Q |
1 |
catcactatagcatggagtgttgcaatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtgcaaggtaacggtcaatttgaaacca |
100 |
Q |
| |
|
|||||||||| |||| || |||||| || ||||| ||| ||||||||||||||| ||| || ||||| |||| |||||||||||| |||||||||||||| |
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| T |
54474496 |
catcactataacatgaagggttgcagtattttttaaacttagaaaaatatgtctcgtcggatactatatgaactgcaaggtaacgatcaatttgaaacca |
54474595 |
T |
|
| Q |
101 |
ttgagacccttttttccattgtgaa |
125 |
Q |
| |
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||||||||||||| ||||||||||| |
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| T |
54474596 |
ttgagacccttttctccattgtgaa |
54474620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 54474706 - 54474766
Alignment:
| Q |
160 |
ttgagttcattagataagtataaattgtggagaaattgaacaatggtatacatgattctga |
220 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
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| T |
54474706 |
ttgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgattctga |
54474766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 1137589 - 1137488
Alignment:
| Q |
24 |
caatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtgcaaggtaacggtcaatttgaaaccattgagacccttttttccattgtg |
123 |
Q |
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||||| |||||||||||||||||||||| |||||| || || || ||| |||||| ||||| |||||||| |||||||||| ||||||| ||||||||| |
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| T |
1137589 |
caatattttttgaacatagaaaaatatggcttgtcggagacaatacgaactgcaagataacgatcaatttggaaccattgagccccttttctccattgtg |
1137490 |
T |
|
| Q |
124 |
aa |
125 |
Q |
| |
|
|| |
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|
| T |
1137489 |
aa |
1137488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 1140882 - 1140815
Alignment:
| Q |
141 |
gcttccacaaaggtttcatttgagttcattagataagtataaattgtggagaaattgaacaatggtat |
208 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
1140882 |
gcttccacaaatgtttgttttgagttcattagataagtgtagattgtggagaaattgaacaatggtat |
1140815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 1137427 - 1137354
Alignment:
| Q |
135 |
tcattggcttccacaaaggtttcatttgagttcattagataagtataaattgtggagaaattgaacaatggtat |
208 |
Q |
| |
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||||| ||||||||||| |||| ||||| |||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
1137427 |
tcattagcttccacaaatgtttgttttgatttcattagataagtgtagattgtgaagaaattgaacaatggtat |
1137354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 1141050 - 1140949
Alignment:
| Q |
24 |
caatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtgcaaggtaacggtcaatttgaaaccattgagacccttttttccattgtg |
123 |
Q |
| |
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||||| |||||||| | ||||||||||| |||||| || || || || ||||| ||||| |||||||| |||||||||| ||||||| ||||||||| |
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| T |
1141050 |
caatattttttgaagacagaaaaatatggcttgtcggagacgatacaaaccgcaagataacgatcaatttggaaccattgagccccttttctccattgtg |
1140951 |
T |
|
| Q |
124 |
aa |
125 |
Q |
| |
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|| |
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|
| T |
1140950 |
aa |
1140949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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