View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_low_1 (Length: 615)
Name: NF5890_low_1
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Complemental strand, 2489793 - 2489203
Alignment:
| Q |
8 |
acattattctcgtcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagca |
107 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489793 |
acattcttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagca |
2489694 |
T |
|
| Q |
108 |
ttgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattac |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489693 |
ttgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattac |
2489594 |
T |
|
| Q |
208 |
tagttcttgaagtgaatctttagtctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489593 |
tagttcttgaagtgaatctttagtctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttc |
2489494 |
T |
|
| Q |
308 |
tcaaactcattatcaggaacttcctgcaagtgaagagattgtgttgtgtttgaataagccacttgcggtatgatttcaacactattaaaattaaattgta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489493 |
tcaaactcattatcaggaacttcctgcaagtgaagagattgtgttgtgtttgaataagccacttgcggtatgatttcaacactattaaaattaaattgta |
2489394 |
T |
|
| Q |
408 |
atatatctaataattagaaaacagagaaggcttacagctttggatgcaggaactgaattttcaccatcagttttgcgcactgaagttggtatttctgctt |
507 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489393 |
atatatctaacaattagaaaacagagaaggcttacagctttggatgcaggaactgaattttcaccatcagttttgcgcactgaagttggtatttctgctt |
2489294 |
T |
|
| Q |
508 |
cagtctttacagcaggagcaggactttcagtctttccttctggtttcacagcagctccttcctcttttttctttattcgggatgatacata |
598 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489293 |
cagtctttacagcaggtgcaggactttcagtctttccttctggtttcacagcagctccttcctcttttttctttattcgggatgatacata |
2489203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 41591193 - 41591529
Alignment:
| Q |
8 |
acattattctcgtcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagca |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| |
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|
| T |
41591193 |
acattcttctcatcttcaccaaaccatttagaagtgatggtagacatggacacattaatgaaacttgctccagcttcctttgcaatggccttcgccagca |
41591292 |
T |
|
| Q |
108 |
ttgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattac |
207 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||| | ||| || |||||||| ||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
41591293 |
ttgttttcccagttccaggaggcccaaatagcaatattccccgacatggttttagaagtcctccagtgaaaaggtctggccttcgaagaggaagcattac |
41591392 |
T |
|
| Q |
208 |
tagttcttgaagtgaatctttagtctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttc |
307 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||||||||| || |||||||| || |||| ||||||||||| || |||||||| |||||||||||| |
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|
| T |
41591393 |
tagttcttgaagtgattcttttgtttcttctaaggcaccaatatcagagaatgtgacatcaatctcatttgctggtataacttcaggccttattcgcttc |
41591492 |
T |
|
| Q |
308 |
tcaaactcattatc---aggaacttcctgcaagtgaa |
341 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
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| T |
41591493 |
tcaaattcattatcaggaggaacttcctgcaagtgaa |
41591529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 11094604 - 11094921
Alignment:
| Q |
20 |
tcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctg |
119 |
Q |
| |
|
||||| || |||||||| |||||||| || ||||| || || ||||||||||||||||| || || || ||||| |||||||| |||||||||||||| | |
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| T |
11094604 |
tcttctccgaaccattttgaagtgatcgtggacatcgagacgttaatgaaacttgctcctgcttcattcgcaatcgcctttgctagcattgtttttccgg |
11094703 |
T |
|
| Q |
120 |
ttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttcttgaag |
219 |
Q |
| |
|
| |||||||| || || || ||||| |||||||| ||||||||||| || |||| ||||||||||| |||| |||||||||||||||||| |||||||| |
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| T |
11094704 |
taccaggtggaccgaaaagtaatatacctctacatggctttagaagtccacctttgaaaaggtctggtcttctaaggggaagcattactagctcttgaag |
11094803 |
T |
|
| Q |
220 |
tgaatctttagtctcgtctaaggcaccaatgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcatta |
319 |
Q |
| |
|
|| ||||| |||| ||||| ||||| || || | |||||| || || || |||||||| ||||| ||||||||||| ||||||||||| || || || |
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| T |
11094804 |
cgattcttttatctcatctaatgcaccgatatctgcgaatgtaacacctatctcatttgcagggataacttcaggtctaattcgcttctcgaattcgttg |
11094903 |
T |
|
| Q |
320 |
tcaggaacttcctgcaag |
337 |
Q |
| |
|
|| ||||||||||||||| |
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| T |
11094904 |
tcgggaacttcctgcaag |
11094921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 39697027 - 39697136
Alignment:
| Q |
38 |
gaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaata |
137 |
Q |
| |
|
||||| ||| |||||||||| | ||||||||| |||||||||| ||| |||| | |||||||| |||||||||||||| || ||||| || ||||| | |
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| T |
39697027 |
gaagtaatgctagacatggagatgttaatgaaatttgctccagcttcggttgctaccgcctttgcaagcattgtttttcccgtgccaggggggccaaaaa |
39697126 |
T |
|
| Q |
138 |
gcaatattcc |
147 |
Q |
| |
|
|||||||||| |
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|
| T |
39697127 |
gcaatattcc |
39697136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 44926730 - 44926625
Alignment:
| Q |
59 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
158 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||| || ||||| || |||| ||| |||| |||| |
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|
| T |
44926730 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggct |
44926631 |
T |
|
| Q |
159 |
ttagaa |
164 |
Q |
| |
|
| |||| |
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|
| T |
44926630 |
tcagaa |
44926625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 44935170 - 44935065
Alignment:
| Q |
59 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
158 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| ||||| || |||||||| |||||||| ||||| || ||||| ||||||| ||| |||| |||| |
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|
| T |
44935170 |
acattgatgaaacttgctccagcttcatttgcaattgccttggcaagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggct |
44935071 |
T |
|
| Q |
159 |
ttagaa |
164 |
Q |
| |
|
| |||| |
|
|
| T |
44935070 |
tcagaa |
44935065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 45988556 - 45988450
Alignment:
| Q |
59 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
158 |
Q |
| |
|
||||| |||||||||||||||| || || ||||| |||||||| |||||||| |||||||| ||||| || ||||| ||||||| ||| |||| |||| |
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| T |
45988556 |
acattgatgaaacttgctccagattcattagcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggct |
45988457 |
T |
|
| Q |
159 |
ttagaag |
165 |
Q |
| |
|
| ||||| |
|
|
| T |
45988456 |
tcagaag |
45988450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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