View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_low_8 (Length: 322)
Name: NF5890_low_8
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_low_8 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 98385 - 98085
Alignment:
| Q |
9 |
attatacttgcctcaatagcatgagcggatctcaccaaggtagcatctagttgcactcttgcaagataacatgccttttcattgggttcaaccatgcacg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
98385 |
attaaacttgcctcaatagcatgagcggatctcaccaaggtagcatctagttgcactcttgcaagataacatgccttttcattgggttcaaccatgcaag |
98286 |
T |
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| Q |
109 |
tcgtgattttttaatatcctgggatgaattgaaacaaatcaatagcatgaacgaatctaaccaatgtagtttctagttcaatcagtcatttggagctata |
208 |
Q |
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| T |
98285 |
tcgtgattttttaatatcctgggatgaattgaaacaaatcaatagcatgaacgaatctaaccaatgtagtttctagttcaatcagtcatttggagctata |
98186 |
T |
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| Q |
209 |
atgatcggatatagatatcatgatttttgagttggagttatttagaagtttcattgtgacaaacc---atttatagtattgcaattggtacgaatacaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
98185 |
atgatcggatatagatatcatgatttttgagttggagttatttagaagtttcattgtgacaaaccattatttatagtattgcaattggtacgaatacaac |
98086 |
T |
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| Q |
306 |
c |
306 |
Q |
| |
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| T |
98085 |
c |
98085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 40867897 - 40868197
Alignment:
| Q |
9 |
attatacttgcctcaatagcatgagcggatctcaccaaggtagcatctagttgcactcttgcaagataacatgccttttcattgggttcaaccatgcacg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40867897 |
attaaacttgcctcaatagcatgagcggatctcaccaaggtagcatctagttgcactcttgcaagataacatgccttttcattgggttcaaccatgcaag |
40867996 |
T |
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| Q |
109 |
tcgtgattttttaatatcctgggatgaattgaaacaaatcaatagcatgaacgaatctaaccaatgtagtttctagttcaatcagtcatttggagctata |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40867997 |
tcgtgattttttaatatcctgggatgaattgaaacaaatcaatagcatgaacgaatctaaccaatgtagtttctagttcaatcagtcatttggagctata |
40868096 |
T |
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| Q |
209 |
atgatcggatatagatatcatgatttttgagttggagttatttagaagtttcattgtgacaaacc---atttatagtattgcaattggtacgaatacaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40868097 |
atgatcggatatagatatcatgatttttgagttggagttatttagaagtttcattgtgacaaaccattatttatagtattgcaattggtacgaatacaac |
40868196 |
T |
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| Q |
306 |
c |
306 |
Q |
| |
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| |
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| T |
40868197 |
c |
40868197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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