View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5890_low_9 (Length: 238)
Name: NF5890_low_9
Description: NF5890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5890_low_9 |
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| [»] scaffold0186 (2 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 6501 - 6627
Alignment:
| Q |
16 |
cactgatataattgttgtctattaggttttggcaaatgttgacacaagtcgaggtcctataagcatataaagttgcataaaatgttgctaaagggaatgg |
115 |
Q |
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| T |
6501 |
cactgatataattggtgtctattaggttttggcaaatgttgacacaactcgaggtcctataagcatataaagttgcataaaatgttgctaaagggaatgg |
6600 |
T |
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| Q |
116 |
actttgcatgacagagcatgtggtaca |
142 |
Q |
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| T |
6601 |
actttgcatgacagagcatgtggtaca |
6627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 6683 - 6768
Alignment:
| Q |
136 |
tggtacaaatgaaatattcaatccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaataactccttgt |
221 |
Q |
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| T |
6683 |
tggtacaaataaaatattcaatccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaataactccttgt |
6768 |
T |
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 50615618 - 50615426
Alignment:
| Q |
16 |
cactgatataattgttgtctattaggttttggcaaatgttgacacaagtcgaggtcctataagcatataaagttgcataaaatgttgctaaagggaatgg |
115 |
Q |
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| T |
50615618 |
cactgacatcattgttgcctaataggttttggcaaatgttgacacaactcaaggtgcaataagcata-aaagttggataaaatgttgctcaagggaatag |
50615520 |
T |
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| Q |
116 |
actttgcatgacagagcatgtggtacaaatgaaatattcaa-tccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaa |
210 |
Q |
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| T |
50615519 |
actttgtatgacagagtaggtggtacaa--gtaatattcaactctgtattagaacgaactagatattaatctacacatttgtggaaattgtcaaaa |
50615426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 18872702 - 18872780
Alignment:
| Q |
16 |
cactgatataattgttgtctattaggttttggcaaatgttgacacaagtcgaggtcctataagcatataaagttgcata |
94 |
Q |
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| T |
18872702 |
cactgatataattgttgtctattaggttttggcaaatgttgacacaactcgaggtcctataagcatataacgttacata |
18872780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 112575 - 112677
Alignment:
| Q |
21 |
atataattgttgtctattaggttttggcaaatgttgacacaagtcgaggtcctataagcatataaagttgcataaaatgttgctaaagggaatggacttt |
120 |
Q |
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|||||||||||||||| ||||||||||||||| ||| |||| || |||| |||| |||||| ||| ||||||||||||||||||||||||| ||| |
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| T |
112575 |
atataattgttgtctactaggttttggcaaat--tgagacaactcaaggtgaagtaaggatataacgttagataaaatgttgctaaagggaatggagttt |
112672 |
T |
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| Q |
121 |
gcatg |
125 |
Q |
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||||| |
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| T |
112673 |
gcatg |
112677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 112740 - 112820
Alignment:
| Q |
136 |
tggtacaaatgaaatattcaa-tccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaataact |
215 |
Q |
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|||||||| | |||||||||| |||||||| |||||||||||| || ||||| || |||| | ||||||||||||| |||| |
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| T |
112740 |
tggtacaagtaaaatattcaactccttgttagaatgaactagagatttatctacatatttttaaaaatcgtcaaaagaact |
112820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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