View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5891_high_1 (Length: 216)
Name: NF5891_high_1
Description: NF5891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5891_high_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 44144817 - 44145029
Alignment:
| Q |
4 |
aatcgtaaataaacaactataatatcaggtgttttatagtcaaaaaatgccatcaaatttagactcacttgcaagcttcgaataggaggattattttatt |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
44144817 |
aatcgtaaataaacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggattattttaat |
44144916 |
T |
|
| Q |
104 |
ctttttgacatgaaaacaagattttcattagagacataataagtcataacaaatgcaattcatggcaaggtctggaccattttaaaaccaaagtcctaga |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44144917 |
ttttttgacatgaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaaagtcctaga |
44145016 |
T |
|
| Q |
204 |
attcatgtgctgc |
216 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44145017 |
attcatgtgctgc |
44145029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University