View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892-Insertion-1 (Length: 775)

Name: NF5892-Insertion-1
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892-Insertion-1
NF5892-Insertion-1
[»] chr1 (1 HSPs)
chr1 (8-748)||(21013334-21014067)


Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 748
Target Start/End: Original strand, 21013334 - 21014067
Alignment:
Q  8 aagagtttctactcgaatctttgacctagagaagataagttttcaagttagtttcgagtactatactcaaatgctctagaaaacttataaagaatgaagt 107  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  21013334 aagagtttgtacttgaatctttgacctagagaagataagttttcaagttagtatctagtactatactcaaatgctctagaaaacttgtaaagaatgaagt 21013433  T
Q  108 cttgaagctccagatatttccataagcactctctatcatacattatgttcattttttaaagtagtcaaggttcaaatgacccctatttccaagaaaatga 207  Q
     |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21013434 gttgaagctacagatatttccataagcactctctatcgtacactatgttcattttttaaagtagtcaaggttcaaatgacccctatttccaagaaaatga 21013533  T
Q  208 aactgaaagttgaaaatagaactctatgcaacnnnnnnnnncaatgtttcgaagatgatcatagaaaatatgtctgaggcataactcaatagttcgtcca 307  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21013534 aactgaaagttgaaaatagaactctatgcaacaaaagaaaacaatgtttcgaagacgatcatagaaaatatgtctgaggcataactcaatagttcgtcca 21013633  T
Q  308 aaaaagcttgtatnnnnnnntgaaactatgatacttcacaatggacctttactgtaacagtagttccagcattccctctaagcctcttcgctgcaccttc 407  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21013634 aaaaagcttgtataaaaaaatgaaactatgatacttcacaatggacctttactgtaacagttgttccagcattccctctaagcctcttcgctgcaccttc 21013733  T
Q  408 actatcaatgccattaagcctctcccctgcacaatcagatccattttcaaacaaaagaaaattactatttcattttcacaaggactaaatgtaataatat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      |||||| ||    
T  21013734 actatcaatgccattaagcctctcccctgcacaatcagatccattttcaaacaaaagaaaattactatttcattttcagaaggac------taataaaat 21013827  T
Q  508 tttacagaaaatcactttttacagcatcattctacattactgttttcaaattaaatattttagaataactaacttggtcagtaccatttatttcaactaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21013828 tttacagaaaatcactttttacagcatcattctacattactgttttcaaattaaatattttagaataactaacttggtcagtaccatttatttcaactaa 21013927  T
Q  608 ttcatctccttgatgaataccggcacgagcagctggactgttttctatgcatgacaaaacaacctgtgattttcagatannnnnnnnnnnnnnnnaaaag 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||    
T  21013928 ttcatctccttgatgaataccggcacgagcagctggactgttttctatgcatgacaaaacaacctgtgattttcagata-tttttatttttttttaaaag 21014026  T
Q  708 acagacaatcataatttaagaacggaaatcaacacaggttc 748  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21014027 acagacaatcataatttaagaacggaaatcaacacaggttc 21014067  T

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