View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892-Insertion-2 (Length: 731)
Name: NF5892-Insertion-2
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892-Insertion-2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 6e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 556 - 731
Target Start/End: Complemental strand, 52391653 - 52391483
Alignment:
| Q |
556 |
tgtacaagatttccacattccctcctatattttccacctctgaagccatcccttctcataccttttaaactctcaaa-ttggaacagaattcctgttcca |
654 |
Q |
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| T |
52391653 |
tgtacaagatttccacattccctcctatattttccaactctgaagtcatcccttctcatacctttcaaactctcaaaattggaacagg------gttcca |
52391560 |
T |
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| Q |
655 |
acttgaagagggaatcttattagtgatattacaaaaactaatgatgattggaggctaaattttttatgttccttttc |
731 |
Q |
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| T |
52391559 |
acttgaagagggaatcttattagtgatattacaaaaactaatgatgattggaggctaaattttttatgttccttttc |
52391483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 455 - 517
Target Start/End: Complemental strand, 52393099 - 52393037
Alignment:
| Q |
455 |
ctgctaaacaactagtcttatcttttagtaaaagtacttctatgcttcgtcatttaatcttgt |
517 |
Q |
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| T |
52393099 |
ctgctaaacaactagtcttatcttttagtaaaagtacttctatgcttcgtcatttaatcttgt |
52393037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 8504365 - 8504716
Alignment:
| Q |
11 |
aacatccatcaccatgataacactttgatttcctccaccaaatcatccacctcaaagtttattcccttgaagatcttatcattcctcctacaccacaaaa |
110 |
Q |
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| T |
8504365 |
aacatccatcgccatgataacactttaatctcgtccaccaattcctctacctcaacattcctcccattgaaaatcttctcattacgcctattccatagca |
8504464 |
T |
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| Q |
111 |
cccaaatagaagtatgccaaattaaccacattcccttagttaattttttggaatttcctccggcactccaacattcccaatgaataaagaagtttggagg |
210 |
Q |
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| T |
8504465 |
cccatattgtagtgtgccaaattagccacaagccttttgttaccttttttgaattaccccctacactccaacattcccaatgaataacgaaatttggagg |
8504564 |
T |
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| Q |
211 |
tgtgaggaaactacaattcaaccataacatctaacttaagccataccca-acttgctacatcacaatgtaaaaagagatgaagcgtcgattcctccttcg |
309 |
Q |
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| T |
8504565 |
ggttaaaaaccaaaaattcaaccacaccat-taatttgagccaaaaccgcacacgccacatcacaatgtaagaaaagatgtagcgccgattcctccttta |
8504663 |
T |
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| Q |
310 |
cattgcacatcacacataacgtagacacctccggaggtagcacatttctcaac |
362 |
Q |
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| T |
8504664 |
gattacacatgacacacaacggagaaacctccggcggtagcacattcctcaac |
8504716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 52393166 - 52393122
Alignment:
| Q |
369 |
ttgtcttgccctagttctattggcaaattgcatcctctagtgtct |
413 |
Q |
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| T |
52393166 |
ttgtcttgccctagttctattggcaaattgcatcctctagtgtct |
52393122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 47476592 - 47476232
Alignment:
| Q |
9 |
ccaacatccatcaccatgataacactttgatttcctccaccaaatcatccacctcaaagtttattcccttgaagatcttatcattcctcctacaccacaa |
108 |
Q |
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| T |
47476592 |
ccaacatccatctccaagataacactttgatttcctcaaccaattcctccacctcaaaattcctccccttgaagatcttatcatttctcctattccacaa |
47476493 |
T |
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| Q |
109 |
aacccaaatagaagtatgccaaattaaccacattcccttagttaattttttggaatttcctccggcactccaacattcccaatgaataaagaagtttgga |
208 |
Q |
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| T |
47476492 |
aacccaaatcgttgtgtgccaaattaaccaaaatcctttggtaacttttttagaatttcccccaacactccaacattcccaatgaacaaagaaatttgga |
47476393 |
T |
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| Q |
209 |
ggtgtgaggaaactacaattcaaccataacatctaacttaagccatacccaacttgctacatcacaatgtaaaaagagatgaagcgtcgattcctccttc |
308 |
Q |
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| T |
47476392 |
ggtgtgaaaaagctacaattcaaccacatcatc-aaagtacgccacaccaaaaccgcaacgtcacaatgtagaaagaggtgtaacgccgattcttccttc |
47476294 |
T |
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| Q |
309 |
gcattgcacatcacacataacgtagacacctccggaggtagcacatttctcaacccaagatt |
370 |
Q |
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| T |
47476293 |
acattgcacatcacacataacgtagacgcttccggtggtaacacattcctcaacgcaagatt |
47476232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 43073923 - 43073956
Alignment:
| Q |
174 |
cactccaacattcccaatgaataaagaagtttgg |
207 |
Q |
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| T |
43073923 |
cactccaacattcccaatgaataaacaagtttgg |
43073956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 31035005 - 31035096
Alignment:
| Q |
47 |
accaaatcatccacctcaaagtttattcccttgaagatcttatcattcctcctacaccacaaaacccaaatagaagtatgccaaattaacca |
138 |
Q |
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| T |
31035005 |
accaattcctccacctcaaagtttattcccttgaaaatcatgtcatttctcgttttccacaaaacccaaatagttgtgtgctaaattaacca |
31035096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 10430381 - 10430342
Alignment:
| Q |
168 |
ctccggcactccaacattcccaatgaataaagaagtttgg |
207 |
Q |
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| T |
10430381 |
ctccggcactccaacattcccaatgaataaacaaatttgg |
10430342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 40931796 - 40931846
Alignment:
| Q |
310 |
cattgcacatcacacataacgtagacacctccggaggtagcacatttctca |
360 |
Q |
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| T |
40931796 |
cattacacattacacataacgtagacacctccagaggtaggacattcctca |
40931846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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