View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892-Insertion-3 (Length: 725)
Name: NF5892-Insertion-3
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 326 - 725
Target Start/End: Original strand, 28231363 - 28231760
Alignment:
| Q |
326 |
gggaaattttgaaacttttggtaatatttatagagccctatatatatctcatagctgtgcctataaattttaaacgtaacaatataatatagaagggacc |
425 |
Q |
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| T |
28231363 |
gggaaattttgaaacttttgctaatatttatagagccctata--tatctcatagctgtgcctataaattttaaacgtaacaatataatatagaagggacc |
28231460 |
T |
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| Q |
426 |
acatatttagttataccaaactttattatcaactaatagaaaagcaatttatgtatcaaagttcttcataaatggcatattttagaatttacgtccaagt |
525 |
Q |
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| T |
28231461 |
acatatttagttataccaaactttattatcaactaatagaaaagcaatttatgtatcaaaattcttcataaatggcatattttagaatttacgtccaagt |
28231560 |
T |
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| Q |
526 |
cttcaagtgttaaccgtcaattttccatttctaatgtatttcttttcagctttgattttcttttctacttgggtatcttaccaatttaccatttcataaa |
625 |
Q |
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| T |
28231561 |
cttcaagtgttaaccgtcaattttccatttctaatgtatttcttttcagctttgattttcttttctacttgggtatcttaccaatttaccatttcataaa |
28231660 |
T |
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| Q |
626 |
gaccgtagatttttgttaatttactttcaaaacgaaactctactttgagtaaaaaacatttgtatcgaatgacattcattgtatagcgtttaatcatacc |
725 |
Q |
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| T |
28231661 |
gaccgtagatttttgttaatttactttcaaaacgaaactctactttgagtaaaaaacatttgtattgaatgacattcattgtatagcgtttaatcatacc |
28231760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 28231021 - 28231320
Alignment:
| Q |
9 |
caagcaacattaatgatgatagaatatgcccctacttcaaccataaatttgtggtaattttgtttcaaatttttaatgaagcaaactataggaaccacta |
108 |
Q |
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| T |
28231021 |
caagcaacattaatgatgatagaatatgccc-tacttcaaccataaatttgtggtaattttgtttcaaatttttaatgaagcaaactataggaaccacta |
28231119 |
T |
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| Q |
109 |
gttagggcactaaacaagaaatttattgaatgtgaaacttcaagttcaactccatatatcatgatgtttcaacttttagccaaaaagtacattatttcaa |
208 |
Q |
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| T |
28231120 |
gttaggtcactaaacaagaaatttattgaatgtgaaacttcaagttcaactccatatatcatgatgtttcaacttttagccaaaaagtacattatttcaa |
28231219 |
T |
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| Q |
209 |
ttgtagtgcctagcatgtgttgatatggttcagtcactagttttgtgacccaatatgcttcattacaatgataagagaatggaatttaagagtgatatat |
308 |
Q |
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| T |
28231220 |
ttgtagtgcctagcatgtgttgatatggttcagtcactagttttgtgacccaatatgcttcattacaatgataagagaatggaatttaagagtaatatat |
28231319 |
T |
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