View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892-Insertion-6 (Length: 527)
Name: NF5892-Insertion-6
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 48133658 - 48134181
Alignment:
| Q |
9 |
ggttccacccttactttcacaannnnnnnncacaaacttgaaccatacttggtcaaaactcatatggtaagcacatatttctcaatatcatccaacaaat |
108 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48133658 |
ggttccacccttactttcacaattttttt-cacaaacttgaaccatacttggtcaaaactcatatggtaagcacatatttctcaatatcatccaacaaat |
48133756 |
T |
|
| Q |
109 |
agattgagtacctctttggcatagcgttttccca-----------ggtttaaaggctgaaacgtggtttcaacattttcttaggtgtttggataactgca |
197 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48133757 |
agattgagtacctgtttggcatagcgttttcccatctcaaacggcggtttaaaagctgaaacgtggtttcaacattttcttaggtgtttggataactgca |
48133856 |
T |
|
| Q |
198 |
aacgggattctaccaaacgtggttctagcccccaacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaa |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
48133857 |
aacgggattctaccaaacgtggttctagcccccaacgcccgtttatgaaaagctagaaaatgaagcttttgcggcaactcaacgccagtttggaatttaa |
48133956 |
T |
|
| Q |
298 |
tttatggtgacaaattggaaattccctaattacccatgacttgttttctattaccgtgttcctttcaacagcataagccacattgatattgttt------ |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48133957 |
tttatggtgacaaattggaaattccctaattacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgtttaatttc |
48134056 |
T |
|
| Q |
392 |
--aatttctcaatcgtaaggacagagaagattttcgtttcattactgtgatgatttttacannnnnnnnnncttctacatttcagaccaatgaatattat |
489 |
Q |
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||||||||||| ||||||||| | ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| | |
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| T |
48134057 |
tcaatttctcaattgtaaggacaaataagattttcgtttcattacagtgatgatttatacagattttttt--ttctacatttcagaccaatgaatattct |
48134154 |
T |
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| Q |
490 |
ttagttgctcagcattcttgaacctct |
516 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
48134155 |
ttagttgctcagcattcttgaacctct |
48134181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 145 - 387
Target Start/End: Complemental strand, 4069237 - 4068994
Alignment:
| Q |
145 |
tttaaaggctgaaacgtggtttcaacattttcttaggtgtttggataactgcaaacgggattctaccaaacgtggttctagccccc-aacgcccgttttt |
243 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
4069237 |
tttaaaggctcaaacatggtttcaacattttcttaggtgtttggataactgcaaacgggattctagcaaacgtggttctagccccccaacgcccgtttct |
4069138 |
T |
|
| Q |
244 |
gaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattggaaattccctaattacccatgacttgttt |
343 |
Q |
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| T |
4069137 |
gaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttgaaatttaatttatggtgacaaattgaaaattccctaattacccatgacttgttt |
4069038 |
T |
|
| Q |
344 |
tctattaccgtgttcctttcaacagcataagccacattgatatt |
387 |
Q |
| |
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||||||||||||||| |||||||| || ||||| |||||||||| |
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| T |
4069037 |
tctattaccgtgttcatttcaacaacacaagccgcattgatatt |
4068994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 4068980 - 4068952
Alignment:
| Q |
372 |
aagccacattgatattgtttaatttctca |
400 |
Q |
| |
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|
| T |
4068980 |
aagccacattgatattgtttaatttctca |
4068952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 227 - 516
Target Start/End: Complemental strand, 31563512 - 31563211
Alignment:
| Q |
227 |
ccccaacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattggaaattccctaa |
326 |
Q |
| |
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||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |
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| T |
31563512 |
ccccaacgcccgtttctaaaaagctagaaaatgaaccttttgcggcaactcaacgccagtttggaatttaatttatggtgataaattggaaattccttaa |
31563413 |
T |
|
| Q |
327 |
ttacccatgacttgttttctattaccgtgttcctttcaacagcataagccacattgatattgtttaa----------------tttctcaatcgtaagga |
410 |
Q |
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||||||||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||| ||||||||| ||||||| |
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| T |
31563412 |
ttacccatgacttgttttc--ttaccgtgttgctttcaacatcaaaagccacattgatattgtttaatttctcaatttctctgtttctcaattgtaagga |
31563315 |
T |
|
| Q |
411 |
cagagaagattttcgtttcattactgtgatgatttttacannnnnnnnnncttctacatttcagaccaatgaatattatttagttgctcagcattcttga |
510 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
31563314 |
catagaagattttcgtttcattacagtgatgatttatacagattttttt--ttctccatttcagaccaatgaatattatttagtttctcaacattcttga |
31563217 |
T |
|
| Q |
511 |
acctct |
516 |
Q |
| |
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|||||| |
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|
| T |
31563216 |
acctct |
31563211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 31563575 - 31563518
Alignment:
| Q |
143 |
ggtttaaaggctgaaacgtggtttcaacattttcttaggtgtttggataactgcaaacg |
201 |
Q |
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|||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
31563575 |
ggtttaaacgccgaaacgtggtttcaacattt-cttagatgtttggataactgcaaacg |
31563518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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